A530017D24Rik Gene Detail

Summary

• Symbol
  A530017D24Rik
• Name
  RIKEN cDNA A530017D24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2144320
  NCBI Gene: 100504229
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:61756029-61758884 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 37.96 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  24

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2144320	lncRNA gene	Chr11:61756029-61758884 (-)
129S1/SvImJ	ENSMUSG00200037500	lncRNA gene	Chr11:58672312-58675809 (-)
A/J	ENSMUSG00195034990	protein coding gene	Chr11:58715469-58718228 (-)
A/J	ENSMUSG00195043831	lncRNA gene	Chr11:58714834-58718324 (-)
AKR/J	ENSMUSG00220050833	lncRNA gene	Chr11:58814473-58817971 (-)
BALB/cJ	ENSMUSG00180050761	lncRNA gene	Chr11:58767922-58771412 (-)
BALB/cJ	ENSMUSG00180047724	protein coding gene	Chr11:58768557-58771316 (-)
C3H/HeJ	ENSMUSG00175037262	protein coding gene	Chr11:58732624-58735383 (-)
C3H/HeJ	ENSMUSG00175048642	lncRNA gene	Chr11:58731989-58735479 (-)
C57BL/6NJ	ENSMUSG00215031311	protein coding gene	Chr11:58475560-58478319 (-)
C57BL/6NJ	ENSMUSG00215040457	lncRNA gene	Chr11:58474925-58478415 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004748	lincRNA gene	Chr11:56687619-56691089 (-)
CAST/EiJ	ENSTCUG00005047671	lncRNA gene	Chr11:58277510-58281009 (-)
CBA/J	ENSMUSG00210040278	lncRNA gene	Chr11:58565034-58568525 (-)
CBA/J	ENSMUSG00210029414	protein coding gene	Chr11:58565670-58568429 (-)
DBA/2J	ENSMUSG00185045358	lncRNA gene	Chr11:58747332-58750823 (-)
FVB/NJ	ENSMUSG00205051142	lncRNA gene	Chr11:58637121-58640619 (-)
JF1/MsJ	ENSUMUG00000051529	lncRNA gene	Chr11:59175441-59178940 (-)
LP/J	ENSMUSG00230050416	lncRNA gene	Chr11:59893575-59897077 (-)
NOD/ShiLtJ	ENSMUSG00190052635	lncRNA gene	Chr11:58746097-58749595 (-)
NZO/HlLtJ	ENSMUSG00225048338	lncRNA gene	Chr11:62036938-62040440 (-)
PWK/PhJ	ENSLUMG00010036254	lncRNA gene	Chr11:58686010-58689524 (-)
SPRET/EiJ	ENSMSPG00010042608	lncRNA gene	Chr11:59358904-59362410 (-)
WSB/EiJ	ENSIUOG00005038673	lncRNA gene	Chr11:58664388-58667882 (-)

Homology

• Gene Tree
  A530017D24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving A530017D24Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• UniProt
  1

• Ensembl
  ENSMUSG00000072847 (Evidence)
• NCBI Gene
  100504229

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072847	Ensembl Gene Model | MGI Sequence Detail	2856	C57BL/6J
transcript	ENSMUST00000148413	Ensembl | MGI Sequence Detail	1313	Not Applicable
polypeptide	Q3UUA7	UniProt | EBI | MGI Sequence Detail	83	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563