Slfnlnc Gene Detail

Summary

• Symbol
  Slfnlnc
• Name
  schlafen long noncoding RNA
• Synonyms
  AI662270, MERRICAL, Schlafenlnc

• Feature Type
  lncRNA gene
• IDs
  MGI:2144254
  NCBI Gene: 100043636
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:83114402-83117410 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 50.30 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2144254	lncRNA gene	Chr11:83114357-83117928 (+)
129S1/SvImJ	ENSMUSG00200051605	lncRNA gene	Chr11:80233835-80236868 (+)
A/J	ENSMUSG00195046734	lncRNA gene	Chr11:80088295-80091327 (+)
AKR/J	ENSMUSG00220048636	lncRNA gene	Chr11:80310071-80313104 (+)
BALB/cJ	ENSMUSG00180044894	lncRNA gene	Chr11:80303056-80306084 (+)
C3H/HeJ	ENSMUSG00175043231	lncRNA gene	Chr11:80235308-80238340 (+)
C57BL/6NJ	ENSMUSG00215043069	lncRNA gene	Chr11:79886701-79889730 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004779	lincRNA gene	Chr11:78149538-78154091 (+)
CAST/EiJ	ENSTCUG00005046080	lncRNA gene	Chr11:79767255-79770274 (+)
CBA/J	ENSMUSG00210047105	lncRNA gene	Chr11:80052942-80055973 (+)
DBA/2J	ENSMUSG00185041347	lncRNA gene	Chr11:80388314-80391344 (+)
FVB/NJ	ENSMUSG00205048484	lncRNA gene	Chr11:80190642-80193670 (+)
JF1/MsJ	ENSUMUG00000053562	lncRNA gene	Chr11:80707547-80710566 (+)
LP/J	ENSMUSG00230029336	lncRNA gene	Chr11:81403098-81406129 (+)
NOD/ShiLtJ	ENSMUSG00190049047	lncRNA gene	Chr11:80402972-80406000 (+)
NZO/HlLtJ	ENSMUSG00225039650	lncRNA gene	Chr11:83542124-83545207 (+)
PWK/PhJ	ENSLUMG00010026024	lncRNA gene	Chr11:80223092-80226116 (+)
SPRET/EiJ	ENSMSPG00010043634	lncRNA gene	Chr11:80622515-80625546 (+)
WSB/EiJ	ENSIUOG00005036396	lncRNA gene	Chr11:80211292-80214316 (+)

Homology

• Gene Tree
  Slfnlnc
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  2 involving Slfnlnc
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  20

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  1

• Ensembl
  ENSMUSG00000087107 (Evidence)
• NCBI Gene
  100043636

Representative Sequences			Length	Strain/Species
genomic	100043636	NCBI Gene Model | MGI Sequence Detail	3009	C57BL/6J
transcript	NR_015519	RefSeq | MGI Sequence Detail	1408	C57BL/6

Molecular
Reagents

• All nucleic 20

  cDNA 20

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2144548, MGI:7614255

References

• Summaries
  All 26

  Phenotypes 10
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:347746 Chen J, et al., Deficiency of lncRNA MERRICAL abrogates macrophage chemotaxis and diabetes-associated atherosclerosis. Cell Rep. 2024 Feb 26;:113815

TSS for Slfnlnc:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103673	Chr11:83114387-83114427 (+)	5 bp
Tssr103674	Chr11:83115265-83115317 (+)	889 bp
Tssr103675	Chr11:83116867-83116896 (+)	2,480 bp