About   Help   FAQ
Slfnlnc Gene Detail
Summary
  • Symbol
    Slfnlnc
  • Name
    schlafen long noncoding RNA
  • Synonyms
    AI662270, Schlafenlnc
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2144254
    NCBI Gene: 100043636
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:83114402-83117410 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 50.30 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    47 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2144254
 lncRNA gene Chr11:83114402-83117430 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005269
 lincRNA gene Chr11:84540942-84544073 (+)
A/J MGP_AJ_G0005254
 lincRNA gene Chr11:81333092-81336269 (+)
AKR/J MGP_AKRJ_G0005232
 lincRNA gene Chr11:83743021-83746050 (+)
BALB/cJ MGP_BALBcJ_G0005234
 lincRNA gene Chr11:81735275-81738305 (+)
C3H/HeJ MGP_C3HHeJ_G0005183
 lincRNA gene Chr11:83794233-83802378 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005386
 lincRNA gene Chr11:87134963-87140002 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0004779
 lincRNA gene Chr11:78149538-78154091 (+)
CAST/EiJ MGP_CASTEiJ_G0005130
 lincRNA gene Chr11:84397324-84400343 (+)
CBA/J MGP_CBAJ_G0005173
 lincRNA gene Chr11:90913618-90917122 (+)
DBA/2J MGP_DBA2J_G0005190
 lincRNA gene Chr11:80908431-80911459 (+)
FVB/NJ MGP_FVBNJ_G0005215
 lincRNA gene Chr11:80411839-80414868 (+)
LP/J MGP_LPJ_G0005271
 lincRNA gene Chr11:85127380-85130405 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005198
 lincRNA gene Chr11:91074797-91077836 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005390
 lincRNA gene Chr11:84018674-84021761 (+)
PWK/PhJ MGP_PWKPhJ_G0005079
 lincRNA gene Chr11:81693776-81697173 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005001
 lincRNA gene Chr11:83566521-83571457 (+)
WSB/EiJ MGP_WSBEiJ_G0005178
 lincRNA gene Chr11:83887241-83890265 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    1
  • Genomic Mutations
    2 involving Slfnlnc
  • Find Mice (IMSR)
    2 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    20
Sequences &
Gene Models
less
  • All Sequences
    34
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100043636 NCBI Gene Model | MGI Sequence Detail 3009 C57BL/6J ±  kb
transcript NR_015519 RefSeq | MGI Sequence Detail 1408 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 20
    cDNA 20

    Microarray probesets 3
Other
Accession IDs
less
MGI:2144548
References
more
  • Summaries
    All 25
    Phenotypes 10
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:345027 Hong Y, et al., Genetic dissection of the impact of lncRNA AI662270 during the development of atherosclerosis. J Transl Med. 2023 Feb 8;21(1):97
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory