BB187676 Gene Detail

Summary

• Symbol
  BB187676
• Name
  expressed sequence BB187676

• Feature Type
  lncRNA gene
• IDs
  MGI:2143903
  NCBI Gene: 103517
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:70435629-70467479 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1087 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2143903	lncRNA gene	Chr10:70435629-70467479 (+)
129S1/SvImJ	ENSMUSG00200017535	lncRNA gene	Chr10:67130151-67130822 (+)
A/J	ENSMUSG00195006062	lncRNA gene	Chr10:67427457-67428128 (+)
AKR/J	ENSMUSG00220028443	lncRNA gene	Chr10:67096213-67096884 (+)
BALB/cJ	ENSMUSG00180007924	lncRNA gene	Chr10:67461888-67462559 (+)
C3H/HeJ	ENSMUSG00175013428	lncRNA gene	Chr10:67316116-67316787 (+)
C57BL/6NJ	ENSMUSG00215004081	lncRNA gene	Chr10:67071275-67071946 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026958	lncRNA gene	Chr10:67031359-67032030 (+)
CBA/J	ENSMUSG00210010048	lncRNA gene	Chr10:67190736-67191407 (+)
DBA/2J	ENSMUSG00185020490	lncRNA gene	Chr10:67532367-67533038 (+)
FVB/NJ	ENSMUSG00205008201	lncRNA gene	Chr10:67271747-67272418 (+)
JF1/MsJ	ENSUMUG00000022780	lncRNA gene	Chr10:68728571-68729242 (+)
LP/J	ENSMUSG00230019961	lncRNA gene	Chr10:69302406-69303077 (+)
NOD/ShiLtJ	ENSMUSG00190008122	lncRNA gene	Chr10:67531964-67532635 (+)
NZO/HlLtJ	ENSMUSG00225047729	lncRNA gene	Chr10:73598565-73599236 (+)
PWK/PhJ	ENSLUMG00010007884	lncRNA gene	Chr10:67124086-67124757 (+)
SPRET/EiJ	ENSMSPG00010023353	lncRNA gene	Chr10:68817830-68818490 (+)
WSB/EiJ	ENSIUOG00005035469	lncRNA gene	Chr10:67047644-67048315 (+)

Homology

• Gene Tree
  BB187676
  

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000120695 (Evidence)
• NCBI Gene
  103517

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120695	Ensembl Gene Model | MGI Sequence Detail	31851	C57BL/6J
transcript	ENSMUST00000245256	Ensembl | MGI Sequence Detail	870	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for BB187676:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94023	Chr10:70435644-70435666 (+)	26 bp