4833445I07Rik Gene Detail

Summary

• Symbol
  4833445I07Rik
• Name
  RIKEN cDNA 4833445I07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2143268
  NCBI Gene: 102731
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:108444626-108446855 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2143268	lncRNA gene	Chr9:108444626-108446855 (+)
129S1/SvImJ	ENSMUSG00200045316	lncRNA gene	Chr9:105642583-105644771 (+)
A/J	ENSMUSG00195045485	lncRNA gene	Chr9:104861460-104863648 (+)
AKR/J	ENSMUSG00220031811	lncRNA gene	Chr9:105248797-105250985 (+)
BALB/cJ	ENSMUSG00180034191	lncRNA gene	Chr9:105177931-105180119 (+)
C3H/HeJ	ENSMUSG00175045849	lncRNA gene	Chr9:105520202-105522390 (+)
C57BL/6NJ	ENSMUSG00215042153	lncRNA gene	Chr9:105497462-105499650 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006832	lincRNA gene	Chr9:103911901-103913542 (+)
CAST/EiJ	ENSTCUG00005034340	lncRNA gene	Chr9:105270072-105272250 (+)
CBA/J	ENSMUSG00210047092	lncRNA gene	Chr9:105367427-105369613 (+)
DBA/2J	ENSMUSG00185044716	lncRNA gene	Chr9:105529628-105531816 (+)
FVB/NJ	ENSMUSG00205050161	lncRNA gene	Chr9:105531018-105533206 (+)
JF1/MsJ	ENSUMUG00000055131	lncRNA gene	Chr9:105356806-105358992 (+)
LP/J	ENSMUSG00230050240	lncRNA gene	Chr9:105671404-105673592 (+)
NOD/ShiLtJ	ENSMUSG00190051336	lncRNA gene	Chr9:105168067-105170255 (+)
NZO/HlLtJ	ENSMUSG00225024426	lncRNA gene	Chr9:105902849-105905037 (+)
PWK/PhJ	ENSLUMG00010044992	lncRNA gene	Chr9:105319015-105321201 (+)
SPRET/EiJ	ENSMSPG00010048033	lncRNA gene	Chr9:107145375-107147487 (+)
WSB/EiJ	ENSIUOG00005047064	lncRNA gene	Chr9:104619655-104621843 (+)

Homology

• Gene Tree
  4833445I07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32

• Ensembl
  ENSMUSG00000103103 (Evidence)
• NCBI Gene
  102731

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103103	Ensembl Gene Model | MGI Sequence Detail	2230	C57BL/6J
transcript	ENSMUST00000193193	Ensembl | MGI Sequence Detail	2230	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 4833445I07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87141	Chr9:108444683-108444696 (+)	64 bp
Tssr87142	Chr9:108444725-108444739 (+)	106 bp