A730082K24Rik Gene Detail

Summary

• Symbol
  A730082K24Rik
• Name
  RIKEN cDNA A730082K24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2142163
  NCBI Gene: 101786
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:114547885-114583195 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 60.53 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  902 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2142163	lncRNA gene	Chr7:114547885-114583202 (+)
129S1/SvImJ	ENSMUSG00200034749	lncRNA gene	Chr7:101101038-101136318 (+)
A/J	ENSMUSG00195041112	lncRNA gene	Chr7:105593889-105629216 (+)
AKR/J	ENSMUSG00220041750	lncRNA gene	Chr7:98999030-99034347 (+)
BALB/cJ	ENSMUSG00180033461	lncRNA gene	Chr7:102258604-102293877 (+)
C3H/HeJ	ENSMUSG00175026594	lncRNA gene	Chr7:102891030-102926299 (+)
C57BL/6NJ	ENSMUSG00215041846	lncRNA gene	Chr7:102211478-102246801 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006605	lincRNA gene	Chr7:117176195-117210974 (+)
CAST/EiJ	ENSTCUG00005044096	lncRNA gene	Chr7:105572881-105607784 (+)
CBA/J	ENSMUSG00210024947	lncRNA gene	Chr7:102717847-102753117 (+)
DBA/2J	ENSMUSG00185022492	lncRNA gene	Chr7:107068116-107103385 (+)
FVB/NJ	ENSMUSG00205050324	lncRNA gene	Chr7:102681879-102717188 (+)
JF1/MsJ	ENSUMUG00000051765	lncRNA gene	Chr7:112127941-112162788 (+)
LP/J	ENSMUSG00230038469	lncRNA gene	Chr7:113187268-113222543 (+)
NOD/ShiLtJ	ENSMUSG00190029556	lncRNA gene	Chr7:102892020-102927289 (+)
NZO/HlLtJ	ENSMUSG00225040248	lncRNA gene	Chr7:111408112-111443373 (+)
PWK/PhJ	ENSLUMG00010042918	lncRNA gene	Chr7:101276103-101310916 (+)
SPRET/EiJ	ENSMSPG00010009609	lncRNA gene	Chr7:102472967-102507641 (+)
WSB/EiJ	ENSIUOG00005012726	lncRNA gene	Chr7:103546729-103582005 (+)

Homology

• Gene Tree
  A730082K24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving A730082K24Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000108379 (Evidence)
• NCBI Gene
  101786

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108379	Ensembl Gene Model | MGI Sequence Detail	35311	C57BL/6J
transcript	ENSMUST00000205913	Ensembl | MGI Sequence Detail	1808	Not Applicable

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 2

References

• Summaries
  All 19

  Phenotypes 6
• Earliest
  J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67