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Clec2l Gene Detail
Summary
  • Symbol
    Clec2l
  • Name
    C-type lectin domain family 2, member L
  • Synonyms
    LOC381758
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141402
    NCBI Gene: 665180
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:38640004-38657800 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 17.85 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2141402
 protein coding gene Chr6:38640002-38657800 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030590
 protein coding gene Chr6:36995659-37016131 (+)
A/J MGP_AJ_G0030563
 protein coding gene Chr6:35378258-35397014 (+)
AKR/J MGP_AKRJ_G0030490
 protein coding gene Chr6:36504642-36523360 (+)
BALB/cJ MGP_BALBcJ_G0030573
 protein coding gene Chr6:35593194-35610786 (+)
C3H/HeJ MGP_C3HHeJ_G0030286
 protein coding gene Chr6:36522487-36541355 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031027
 protein coding gene Chr6:37914735-37934570 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028239
 protein coding gene Chr6:33287917-33305311 (+)
CAST/EiJ MGP_CASTEiJ_G0029688
 protein coding gene Chr6:36416525-36437493 (+)
CBA/J MGP_CBAJ_G0030264
 protein coding gene Chr6:39402798-39422613 (+)
DBA/2J MGP_DBA2J_G0030408
 protein coding gene Chr6:35197306-35214752 (+)
FVB/NJ MGP_FVBNJ_G0030362
 protein coding gene Chr6:34989343-35006972 (+)
LP/J MGP_LPJ_G0030495
 protein coding gene Chr6:37024935-37050253 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030398
 protein coding gene Chr6:41777021-41801829 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031057
 protein coding gene Chr6:36439829-36458613 (+)
PWK/PhJ MGP_PWKPhJ_G0029402
 protein coding gene Chr6:34870700-34887838 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029238
 protein coding gene Chr6:36165952-36183726 (+)
WSB/EiJ MGP_WSBEiJ_G0029764
 protein coding gene Chr6:36384128-36403840 (+)



Homology
more
  • Human Ortholog
    CLEC2L, C-type lectin domain family 2 member L
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLEC2L, C-type lectin domain family 2 member L
  • Links
    NCBI Gene ID: 154790
    neXtProt AC: NX_P0C7M8
    UniProt: P0C7M8

  • Chr Location
    7q34; chr7:139523685-139544985 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 665180 NCBI Gene Model | MGI Sequence Detail 17797 C57BL/6J ±  kb
transcript NM_001101507 RefSeq | MGI Sequence Detail 1445 C57BL/6  
polypeptide P0C7M9 UniProt | EBI | MGI Sequence Detail 211 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 3
Other
Accession IDs
less
MGI:2141649, MGI:2685910, MGI:3779749
References
more
  • Summaries
    All 22
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 1
  • Earliest
    J:275806 Wu D, et al., A Role for Sensory end Organ-Derived Signals in Regulating Muscle Spindle Proprioceptor Phenotype. J Neurosci. 2019 May 29;39(22):4252-4267
  • Latest
    J:335233 Astrof S, et al., Aberrant differentiation of second heart field mesoderm prefigures cellular defects in the outflow tract in response to loss of FGF8. Dev Biol. 2023 Apr 14;499:10-21
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory