C230066G23Rik Gene Detail

Summary

• Symbol
  C230066G23Rik
• Name
  RIKEN cDNA C230066G23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2141339
  NCBI Gene: 97268
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:105728306-105729638 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 50.68 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2141339	lncRNA gene	Chr5:105728306-105729638 (+)
129S1/SvImJ	ENSMUSG00200006627	lncRNA gene	Chr5:99460435-99461767 (+)
A/J	ENSMUSG00195036848	lncRNA gene	Chr5:98916714-98918047 (+)
AKR/J	ENSMUSG00220040053	lncRNA gene	Chr5:98478916-98480249 (+)
BALB/cJ	ENSMUSG00180038076	lncRNA gene	Chr5:99068862-99070194 (+)
C3H/HeJ	ENSMUSG00175034756	lncRNA gene	Chr5:101103197-101104521 (+)
C57BL/6NJ	ENSMUSG00215027215	lncRNA gene	Chr5:99129986-99131318 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034581	sense intronic lncRNA gene	Chr5:98486663-98488011 (+)
CAST/EiJ	ENSTCUG00005024171	lncRNA gene	Chr5:98351560-98352881 (+)
CBA/J	ENSMUSG00210036205	lncRNA gene	Chr5:99860972-99862296 (+)
DBA/2J	ENSMUSG00185050295	lncRNA gene	Chr5:102793102-102794424 (+)
FVB/NJ	ENSMUSG00205042942	lncRNA gene	Chr5:98770456-98771781 (+)
JF1/MsJ	ENSUMUG00000020851	lncRNA gene	Chr5:105805704-105807008 (+)
LP/J	ENSMUSG00230031745	lncRNA gene	Chr5:107001748-107003080 (+)
NOD/ShiLtJ	ENSMUSG00190026197	lncRNA gene	Chr5:98794780-98796112 (+)
NZO/HlLtJ	ENSMUSG00225026242	lncRNA gene	Chr5:114623439-114624771 (+)
PWK/PhJ	ENSLUMG00010016146	lncRNA gene	Chr5:97823357-97824661 (+)
SPRET/EiJ	ENSMSPG00010047506	lncRNA gene	Chr5:100898626-100899938 (+)
WSB/EiJ	ENSIUOG00005033527	lncRNA gene	Chr5:101508697-101510018 (+)

Homology

• Gene Tree
  C230066G23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving C230066G23Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000085771 (Evidence)
• NCBI Gene
  97268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085771	Ensembl Gene Model | MGI Sequence Detail	1333	C57BL/6J
transcript	ENSMUST00000150195	Ensembl | MGI Sequence Detail	650	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2141061

References

• Summaries
  All 19

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for C230066G23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47698	Chr5:105727350-105727369 (+)	-946 bp
Tssr47699	Chr5:105727391-105727399 (+)	-911 bp
Tssr47700	Chr5:105727401-105727427 (+)	-892 bp
Tssr47701	Chr5:105727433-105727443 (+)	-868 bp