AI506816 Gene Detail

Summary

• Symbol
  AI506816
• Name
  expressed sequence AI506816
• Synonyms
  BC023969

• Feature Type
  lncRNA gene
• IDs
  MGI:2140929
  NCBI Gene: 433855
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:23903290-23917684 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 10.39 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  464 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2140929	lncRNA gene	Chr5:23897259-23917684 (-)
129S1/SvImJ	ENSMUSG00200011847	lncRNA gene	Chr5:19529108-19534842 (-)
A/J	ENSMUSG00195042530	lncRNA gene	Chr5:18980796-18995186 (-)
A/J	ENSMUSG00195009304	lncRNA gene	Chr10:102335077-102337794 (+)
AKR/J	ENSMUSG00220038685	lncRNA gene	Chr5:19075382-19080668 (-)
BALB/cJ	ENSMUSG00180026257	lncRNA gene	Chr5:18858941-18864226 (-)
C3H/HeJ	ENSMUSG00175048168	lncRNA gene	Chr5:20779000-20793391 (-)
C57BL/6NJ	ENSMUSG00215029555	lncRNA gene	Chr5:19414641-19429032 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013717	unclassified non-coding RNA gene	Chr5:18633907-18634863 (-)
CAST/EiJ	ENSTCUG00005003564	lncRNA gene	Chr5:19003033-19008458 (-)
CBA/J	ENSMUSG00210005623	lncRNA gene	Chr5:19818453-19832843 (-)
DBA/2J	ENSMUSG00185038840	lncRNA gene	Chr5:21369411-21375429 (-)
FVB/NJ	ENSMUSG00205032724	lncRNA gene	Chr5:18592352-18597637 (-)
JF1/MsJ	ENSUMUG00000027528	lncRNA gene	Chr12:75290291-75293005 (+)
JF1/MsJ	ENSUMUG00000027017	lncRNA gene	Chr1:18717715-18720429 (-)
JF1/MsJ	ENSUMUG00000055359	lncRNA gene	Chr6:115479947-115482661 (+)
JF1/MsJ	ENSUMUG00000007097	lncRNA gene	Chr5:25913987-25928377 (-)
JF1/MsJ	ENSUMUG00000053918	lncRNA gene	Chr5:144454275-144456989 (+)
JF1/MsJ	ENSUMUG00000019433	lncRNA gene	ChrX:13230842-13233556 (-)
JF1/MsJ	ENSUMUG00000031027	lncRNA gene	Chr10:89086767-89089481 (-)
JF1/MsJ	ENSUMUG00000032248	lncRNA gene	Chr18:42258268-42260982 (-)
JF1/MsJ	ENSUMUG00000051689	lncRNA gene	Chr11:3938552-3941266 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190005214	lncRNA gene	Chr5:18896915-18902200 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036356	lncRNA gene	Chr5:18964108-18969833 (-)
SPRET/EiJ	ENSMSPG00010030969	lncRNA gene	Chr5:19836565-19842309 (-)
WSB/EiJ	ENSIUOG00005044404	lncRNA gene	Chr5:21711551-21723608 (-)

Homology

• Gene Tree
  AI506816
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  25
• Chemically induced (other)
  2
• Gene trapped
  21
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving AI506816
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  599
• Tissues
  2
• cDNA Data
  35
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  58
• RefSeq
  2

• Ensembl
  ENSMUSG00000105987 (Evidence)
• NCBI Gene
  433855

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105987	Ensembl Gene Model | MGI Sequence Detail	14395	C57BL/6J
transcript	ENSMUST00000244629	Ensembl | MGI Sequence Detail	2837	Not Applicable

Molecular
Reagents

• All nucleic 35

  cDNA 35

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:3039632

References

• Summaries
  All 35

  Developmental Gene Expression 3

  Diseases 1

  Phenotypes 13
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460

TSS for AI506816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50293	Chr5:23917851-23917885 (-)	-184 bp
Tssr50292	Chr5:23917659-23917689 (-)	10 bp