9930105H17Rik Gene Detail

Summary

• Symbol
  9930105H17Rik
• Name
  RIKEN cDNA 9930105H17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2140904
  NCBI Gene: 100669
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:15703800-15712067 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2140904	lncRNA gene	Chr5:15703800-15712067 (-)
129S1/SvImJ	ENSMUSG00200011629	lncRNA gene	Chr5:11241902-11250564 (-)
A/J	ENSMUSG00195041530	lncRNA gene	Chr5:10888877-10888984 (+)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180027120	lncRNA gene	Chr5:10679157-10687424 (-)
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215042416	lncRNA gene	Chr5:21967174-21975441 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003629	lncRNA gene	Chr5:11069803-11075683 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185018121	lncRNA gene	Chr5:12689060-12697722 (-)
DBA/2J	ENSMUSG00185017537	lncRNA gene	Chr5:13163718-13172379 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000003276	lncRNA gene	Chr5:14310840-14319498 (-)
JF1/MsJ	ENSUMUG00000003284	lncRNA gene	Chr5:15433750-15442404 (-)
JF1/MsJ	ENSUMUG00000003308	lncRNA gene	Chr5:17104746-17113404 (-)
JF1/MsJ	ENSUMUG00000003297	lncRNA gene	Chr5:15620030-15628691 (-)
JF1/MsJ	ENSUMUG00000003320	lncRNA gene	Chr5:17286126-17294787 (-)
JF1/MsJ	ENSUMUG00000003261	lncRNA gene	Chr5:12474871-12483534 (-)
LP/J	ENSMUSG00230003945	lncRNA gene	Chr5:16542124-16550786 (-)
LP/J	ENSMUSG00230004037	lncRNA gene	Chr5:17647272-17655934 (-)
LP/J	ENSMUSG00230003789	lncRNA gene	Chr5:17135226-17143888 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225010201	lncRNA gene	Chr5:21117653-21126315 (-)
NZO/HlLtJ	ENSMUSG00225010032	lncRNA gene	Chr5:23028815-23037082 (-)
NZO/HlLtJ	ENSMUSG00225010239	lncRNA gene	Chr5:21744745-21753012 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  9930105H17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving 9930105H17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120936 (Evidence)
• NCBI Gene
  100669

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120936	Ensembl Gene Model | MGI Sequence Detail	8268	C57BL/6J
transcript	ENSMUST00000246565	Ensembl | MGI Sequence Detail	2964	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573