AI507597 Gene Detail

Summary

• Symbol
  AI507597
• Name
  expressed sequence AI507597

• Feature Type
  lncRNA gene
• IDs
  MGI:2140323
  NCBI Gene: 100165
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr4:141341681-141342915 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 74.64 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2140323	lncRNA gene	Chr4:141341316-141343003 (+)
129S1/SvImJ	ENSMUSG00200048005	lncRNA gene	Chr4:134763843-134765417 (+)
A/J	ENSMUSG00195037396	lncRNA gene	Chr4:136110285-136111863 (+)
AKR/J	ENSMUSG00220048862	lncRNA gene	Chr4:135112085-135113661 (+)
BALB/cJ	ENSMUSG00180047042	lncRNA gene	Chr4:133752279-133753855 (+)
C3H/HeJ	ENSMUSG00175042734	lncRNA gene	Chr4:134778857-134780433 (+)
C57BL/6NJ	ENSMUSG00215050682	lncRNA gene	Chr4:136292898-136294476 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003587	antisense lncRNA gene	Chr4:131301541-131303117 (+)
CAST/EiJ	ENSTCUG00005013724	lncRNA gene	Chr4:135738839-135740414 (+)
CBA/J	ENSMUSG00210030197	lncRNA gene	Chr4:134402802-134404378 (+)
DBA/2J	ENSMUSG00185051644	lncRNA gene	Chr4:135909974-135911552 (+)
FVB/NJ	ENSMUSG00205041572	lncRNA gene	Chr4:134163116-134164694 (+)
JF1/MsJ	ENSUMUG00000048045	lncRNA gene	Chr4:136600785-136602361 (+)
LP/J	ENSMUSG00230040514	lncRNA gene	Chr4:139702333-139703907 (+)
NOD/ShiLtJ	ENSMUSG00190039535	lncRNA gene	Chr4:134158602-134160180 (+)
NZO/HlLtJ	ENSMUSG00225010681	lncRNA gene	Chr4:145648399-145649977 (+)
PWK/PhJ	ENSLUMG00010046625	lncRNA gene	Chr4:133595421-133596999 (+)
SPRET/EiJ	ENSMSPG00010034946	lncRNA gene	Chr4:135640120-135641700 (+)
WSB/EiJ	ENSIUOG00005048096	lncRNA gene	Chr4:134043729-134045303 (+)

Homology

• Gene Tree
  AI507597
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  2
• Targeted
  1
• Genomic Mutations
  3 involving AI507597
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073731 (Evidence)
• NCBI Gene
  100165

Representative Sequences			Length	Strain/Species
genomic	100165	NCBI Gene Model | MGI Sequence Detail	1235	C57BL/6J
transcript	NR_033566	RefSeq | MGI Sequence Detail	864	C57BL/6
polypeptide	Q3V2J3	UniProt | EBI | MGI Sequence Detail	68	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for AI507597:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40087	Chr4:141341624-141341626 (+)	-56 bp
Tssr40088	Chr4:141341651-141341700 (+)	-5 bp
Tssr40089	Chr4:141341895-141341904 (+)	219 bp