AW047730 Gene Detail

Summary

• Symbol
  AW047730
• Name
  expressed sequence AW047730

• Feature Type
  lncRNA gene
• IDs
  MGI:2139951
  NCBI Gene: 99870
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:88108893-88110791 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 38.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139951	lncRNA gene	Chr3:88107850-88110804 (+)
129S1/SvImJ	ENSMUSG00200040374	lncRNA gene	Chr3:84962794-84965652 (+)
A/J	ENSMUSG00195053255	lncRNA gene	Chr3:84984461-84987319 (+)
AKR/J	ENSMUSG00220051679	lncRNA gene	Chr3:84932533-84935391 (+)
BALB/cJ	ENSMUSG00180048820	lncRNA gene	Chr3:85102174-85105032 (+)
C3H/HeJ	ENSMUSG00175049270	lncRNA gene	Chr3:84917479-84920337 (+)
C57BL/6NJ	ENSMUSG00215050856	lncRNA gene	Chr3:85350498-85353356 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013638	unclassified non-coding RNA gene	Chr3:80974746-80977635 (+)
CAST/EiJ	ENSTCUG00005048201	lncRNA gene	Chr3:84438782-84441652 (+)
CBA/J	ENSMUSG00210048231	lncRNA gene	Chr3:85055179-85058037 (+)
DBA/2J	ENSMUSG00185053302	lncRNA gene	Chr3:85190819-85193677 (+)
FVB/NJ	ENSMUSG00205049912	lncRNA gene	Chr3:83979325-83982183 (+)
JF1/MsJ	ENSUMUG00000052380	lncRNA gene	Chr3:84729115-84731952 (+)
LP/J	ENSMUSG00230037168	lncRNA gene	Chr3:87184185-87187043 (+)
NOD/ShiLtJ	ENSMUSG00190050618	lncRNA gene	Chr3:85431560-85434418 (+)
NZO/HlLtJ	ENSMUSG00225008131	lncRNA gene	Chr3:89939751-89942609 (+)
PWK/PhJ	ENSLUMG00010053024	lncRNA gene	Chr3:84819373-84822206 (+)
SPRET/EiJ	ENSMSPG00010050494	lncRNA gene	Chr3:85659574-85662465 (+)
WSB/EiJ	ENSIUOG00005051050	lncRNA gene	Chr3:85431540-85434409 (+)

Homology

• Gene Tree
  AW047730
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  27
• Chemically induced (other)
  1
• Gene trapped
  25
• Radiation induced
  1
• Genomic Mutations
  2 involving AW047730
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000097428 (Evidence)
• NCBI Gene
  99870

Representative Sequences			Length	Strain/Species
genomic	99870	NCBI Gene Model | MGI Sequence Detail	1899	C57BL/6J
transcript	BC072659	GenBank | ENA | DDBJ | MGI Sequence Detail	2596	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for AW047730:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29915	Chr3:88107562-88107576 (+)	-1,324 bp
Tssr29916	Chr3:88107577-88107586 (+)	-1,311 bp
Tssr29917	Chr3:88107592-88107625 (+)	-1,284 bp
Tssr29918	Chr3:88107630-88107655 (+)	-1,250 bp
Tssr29919	Chr3:88107914-88107936 (+)	-968 bp