AI504432 Gene Detail

Summary

• Symbol
  AI504432
• Name
  expressed sequence AI504432

• Feature Type
  lncRNA gene
• IDs
  MGI:2139742
  NCBI Gene: 229694
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:106946820-106961638 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  291 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139742	lncRNA gene	Chr3:106946272-106961663 (+)
129S1/SvImJ	ENSMUSG00200035858	lncRNA gene	Chr3:103561596-103576439 (+)
A/J	ENSMUSG00195025712	lncRNA gene	Chr3:103978353-103993432 (+)
AKR/J	ENSMUSG00220034929	lncRNA gene	Chr3:102348796-102363880 (+)
BALB/cJ	ENSMUSG00180019678	lncRNA gene	Chr3:103935480-103950324 (+)
C3H/HeJ	ENSMUSG00175030228	lncRNA gene	Chr3:103458583-103473660 (+)
C57BL/6NJ	ENSMUSG00215035154	lncRNA gene	Chr3:104196378-104211224 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005702	lincRNA gene	Chr3:101225761-101240645 (+)
CAST/EiJ	ENSTCUG00005027942	lncRNA gene	Chr3:104464592-104479468 (+)
CBA/J	ENSMUSG00210008912	lncRNA gene	Chr3:104080507-104095584 (+)
DBA/2J	ENSMUSG00185022363	lncRNA gene	Chr3:104556549-104571622 (+)
FVB/NJ	ENSMUSG00205033517	lncRNA gene	Chr3:103123596-103138441 (+)
JF1/MsJ	ENSUMUG00000005760	lncRNA gene	Chr3:103513806-103528666 (+)
LP/J	ENSMUSG00230019989	lncRNA gene	Chr3:106474684-106489527 (+)
NOD/ShiLtJ	ENSMUSG00190041437	lncRNA gene	Chr3:104794111-104808954 (+)
NZO/HlLtJ	ENSMUSG00225021240	lncRNA gene	Chr3:108960483-108975393 (+)
PWK/PhJ	ENSLUMG00010025318	lncRNA gene	Chr3:103368223-103383127 (+)
SPRET/EiJ	ENSMSPG00010037353	lncRNA gene	Chr3:103899849-103914965 (+)
WSB/EiJ	ENSIUOG00005004670	lncRNA gene	Chr3:104109100-104123947 (+)

Homology

• Gene Tree
  AI504432
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving AI504432
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  598
• Tissues
  1
• cDNA Data
  24
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000056145 (Evidence)
• NCBI Gene
  229694

Representative Sequences			Length	Strain/Species
genomic	229694	NCBI Gene Model | MGI Sequence Detail	14819	C57BL/6J
transcript	NR_033498	RefSeq | MGI Sequence Detail	5547	C57BL/6
polypeptide	Q8CAB2	UniProt | EBI | MGI Sequence Detail	140	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 24

  cDNA 24

  
  

  Microarray probesets 3

References

• Summaries
  All 22

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for AI504432:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31149	Chr3:106946243-106946260 (+)	-568 bp