C79798 MGI Mouse Gene Detail - MGI:2139494

Sequence Map

Chr2:34177783-34194452 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139494	lncRNA gene	Chr2:34177783-34194452 (+)
129S1/SvImJ	ENSMUSG00200049212	lncRNA gene	Chr2:31157031-31173707 (+)
A/J	ENSMUSG00195040343	lncRNA gene	Chr2:31259255-31275931 (+)
AKR/J	ENSMUSG00220045573	lncRNA gene	Chr2:31374209-31390874 (+)
BALB/cJ	ENSMUSG00180049584	lncRNA gene	Chr2:31273371-31290045 (+)
C3H/HeJ	ENSMUSG00175045255	lncRNA gene	Chr2:31239729-31256400 (+)
C57BL/6NJ	ENSMUSG00215047499	lncRNA gene	Chr2:31306811-31323490 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003168	antisense lncRNA gene	Chr2:30191519-30206705 (+)
CAST/EiJ	ENSTCUG00005017996	lncRNA gene	Chr2:30984238-31000884 (+)
CBA/J	ENSMUSG00210049972	lncRNA gene	Chr2:31312168-31328817 (+)
DBA/2J	ENSMUSG00185048646	lncRNA gene	Chr2:31172305-31188982 (+)
FVB/NJ	ENSMUSG00205037676	lncRNA gene	Chr2:31019988-31036670 (+)
JF1/MsJ	ENSUMUG00000015176	lncRNA gene	Chr2:31062231-31079069 (+)
LP/J	ENSMUSG00230047001	lncRNA gene	Chr2:33092440-33109111 (+)
NOD/ShiLtJ	ENSMUSG00190042172	lncRNA gene	Chr2:31273643-31290322 (+)
NZO/HlLtJ	ENSMUSG00225050069	lncRNA gene	Chr2:40849377-40866074 (+)
PWK/PhJ	ENSLUMG00010044403	lncRNA gene	Chr2:31151677-31168759 (+)
SPRET/EiJ	ENSMSPG00010043234	lncRNA gene	Chr2:31862161-31877172 (+)
WSB/EiJ	ENSIUOG00005041670	lncRNA gene	Chr2:31130850-31147559 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000084908	Ensembl Gene Model \| MGI Sequence Detail	16670	C57BL/6J	± kb
	transcript	ENSMUST00000131588	Ensembl \| MGI Sequence Detail	1793	Not Applicable

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Summaries

All 11

Phenotypes 1
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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