BB218582 Gene Detail

Summary

• Symbol
  BB218582
• Name
  expressed sequence BB218582

• Feature Type
  lncRNA gene
• IDs
  MGI:2139448
  NCBI Gene: 102640562
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:106473262-106480709 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139448	lncRNA gene	Chr2:106473257-106480752 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015451	unclassified non-coding RNA gene	Chr2:108866612-108874086 (-)
A/J	MGP_AJ_G0015427	unclassified non-coding RNA gene	Chr2:104320783-104328232 (-)
AKR/J	MGP_AKRJ_G0015391	unclassified non-coding RNA gene	Chr2:107180294-107187756 (-)
BALB/cJ	MGP_BALBcJ_G0015390	unclassified non-coding RNA gene	Chr2:104604140-104611580 (-)
C3H/HeJ	MGP_C3HHeJ_G0015213	unclassified non-coding RNA gene	Chr2:107504010-107511486 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015844	unclassified non-coding RNA gene	Chr2:112406045-112413503 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013583	unclassified non-coding RNA gene	Chr2:100105475-100112750 (-)
CAST/EiJ	MGP_CASTEiJ_G0014765	unclassified non-coding RNA gene	Chr2:107990597-108002083 (-)
CBA/J	MGP_CBAJ_G0015194	unclassified non-coding RNA gene	Chr2:116325628-116333076 (-)
DBA/2J	MGP_DBA2J_G0015288	unclassified non-coding RNA gene	Chr2:103876456-103883910 (-)
FVB/NJ	MGP_FVBNJ_G0015295	unclassified non-coding RNA gene	Chr2:102826199-102833633 (-)
LP/J	MGP_LPJ_G0015366	unclassified non-coding RNA gene	Chr2:109047353-109054803 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015319	unclassified non-coding RNA gene	Chr2:120130871-120138323 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015884	unclassified non-coding RNA gene	Chr2:107372813-107380269 (-)
PWK/PhJ	MGP_PWKPhJ_G0014553	unclassified non-coding RNA gene	Chr2:103414828-103422284 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014341	unclassified non-coding RNA gene	Chr2:106607636-106615184 (-)
WSB/EiJ	MGP_WSBEiJ_G0014872	unclassified non-coding RNA gene	Chr2:108101676-108109027 (-)

Homology

• Gene Tree
  BB218582
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving BB218582
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1

• Ensembl
  ENSMUSG00000085218 (Evidence)
• NCBI Gene
  102640562

Representative Sequences			Length	Strain/Species
genomic	102640562	NCBI Gene Model | MGI Sequence Detail	7448	C57BL/6J
transcript	NR_137201	RefSeq | MGI Sequence Detail	1038	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for BB218582:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr25571	Chr2:106480697-106480719 (-)	1 bp
Tssr25570	Chr2:106480666-106480683 (-)	34 bp