AV039307 Gene Detail

Summary

• Symbol
  AV039307
• Name
  expressed sequence AV039307

• Feature Type
  lncRNA gene
• IDs
  MGI:2139243
  NCBI Gene: 100502700
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:120681137-120697171 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 60.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  342 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139243	lncRNA gene	Chr2:120680343-120745709 (+)
129S1/SvImJ	ENSMUSG00200048920	lncRNA gene	Chr2:117611675-117627673 (+)
A/J	ENSMUSG00195025591	lncRNA gene	Chr2:117653074-117669059 (+)
AKR/J	ENSMUSG00220043890	lncRNA gene	Chr2:117575944-117591927 (+)
BALB/cJ	ENSMUSG00180045567	lncRNA gene	Chr2:117453705-117469687 (+)
C3H/HeJ	ENSMUSG00175028165	lncRNA gene	Chr2:117927707-117943688 (+)
C57BL/6NJ	ENSMUSG00215030329	lncRNA gene	Chr2:117599396-117615464 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013594	unclassified non-coding RNA gene	Chr2:113689418-113705063 (+)
CAST/EiJ	ENSTCUG00005017317	lncRNA gene	Chr2:116862758-116878824 (+)
CBA/J	ENSMUSG00210007602	lncRNA gene	Chr2:117768640-117784619 (+)
DBA/2J	ENSMUSG00185049183	lncRNA gene	Chr2:117451049-117467028 (+)
FVB/NJ	ENSMUSG00205044843	lncRNA gene	Chr2:116676603-116692583 (+)
JF1/MsJ	ENSUMUG00000044396	lncRNA gene	Chr2:117347521-117363581 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190047113	lncRNA gene	Chr2:117696844-117712826 (+)
NZO/HlLtJ	ENSMUSG00225004531	lncRNA gene	Chr2:127175243-127191219 (+)
PWK/PhJ	ENSLUMG00010048212	lncRNA gene	Chr2:117240087-117256152 (+)
SPRET/EiJ	ENSMSPG00010045878	lncRNA gene	Chr2:119676821-119693204 (+)
WSB/EiJ	ENSIUOG00005029611	lncRNA gene	Chr2:117424847-117440823 (+)

Homology

• Gene Tree
  AV039307
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving AV039307
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  105
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000087519 (Evidence)
• NCBI Gene
  100502700

Representative Sequences			Length	Strain/Species
genomic	100502700	NCBI Gene Model | MGI Sequence Detail	16035	C57BL/6J
transcript	NR_038349	RefSeq | MGI Sequence Detail	1195	C57BL/6
polypeptide	Q9CVX9	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 5

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for AV039307:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19719	Chr2:120680600-120680616 (+)	-529 bp
Tssr19720	Chr2:120681152-120681205 (+)	42 bp