AU015228 Pseudogene Detail

Summary

• Symbol
  AU015228
• Name
  expressed sequence AU015228

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:2139152
  NCBI Gene: 99169
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:129942444-129943763 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 63.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139152	pseudogene	Chr2:129942314-129945295 (+)
129S1/SvImJ	ENSMUSG00200049748	pseudogene	Chr2:126983032-126984351 (+)
A/J	ENSMUSG00195032315	pseudogene	Chr2:127017676-127018995 (+)
AKR/J	ENSMUSG00220045199	pseudogene	Chr2:126776466-126777785 (+)
BALB/cJ	ENSMUSG00180049707	pseudogene	Chr2:126824171-126825490 (+)
C3H/HeJ	ENSMUSG00175047508	pseudogene	Chr2:127359160-127360479 (+)
C57BL/6NJ	ENSMUSG00215037190	pseudogene	Chr2:126865777-126867096 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010617	pseudogene	Chr2:122881079-122882398 (+)
CAST/EiJ	ENSTCUG00005040208	pseudogene	Chr2:126140661-126141959 (+)
CBA/J	ENSMUSG00210036404	pseudogene	Chr2:127216081-127217400 (+)
DBA/2J	ENSMUSG00185035964	pseudogene	Chr2:126870630-126871949 (+)
FVB/NJ	ENSMUSG00205042109	pseudogene	Chr2:126031172-126032491 (+)
JF1/MsJ	ENSUMUG00000028481	pseudogene	Chr2:126685829-126687127 (+)
LP/J	ENSMUSG00230039045	pseudogene	Chr2:128618241-128619560 (+)
NOD/ShiLtJ	ENSMUSG00190016427	pseudogene	Chr2:126975911-126977230 (+)
NZO/HlLtJ	ENSMUSG00225027651	pseudogene	Chr2:136527044-136528363 (+)
PWK/PhJ	ENSLUMG00010043489	pseudogene	Chr2:126647688-126649007 (+)
SPRET/EiJ	ENSMSPG00010034576	pseudogene	Chr2:129027117-129028436 (+)
WSB/EiJ	ENSIUOG00005044691	pseudogene	Chr2:126794170-126795489 (+)

Homology

• Gene Tree
  AU015228
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving AU015228
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000074804 (Evidence)
• NCBI Gene
  99169

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074804	Ensembl Gene Model | MGI Sequence Detail	1320	C57BL/6J
transcript	ENSMUST00000121103	Ensembl | MGI Sequence Detail	1320	Not Applicable
polypeptide	NP_001028369	RefSeq | MGI Sequence Detail	439	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR024550 TFIIEalpha/SarR/Rpc3 HTH domain
  IPR039997 Transcription factor E
  IPR017919 Transcription factor TFE/TFIIEalpha HTH domain
  IPR021600 Transcription factor TFIIE alpha subunit, C-terminal
  IPR002853 Transcription initiation factor IIE subunit alpha, N-terminal
  IPR013083 Zinc finger, RING/FYVE/PHD-type

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 5

References

• Summaries
  All 16

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563