Pax1dt Gene Detail

Summary

• Symbol
  Pax1dt
• Name
  paired box 1 divergent transcript
• Synonyms
  AI646519, OTTMUSG00000015701, Peat

• Feature Type
  lncRNA gene
• IDs
  MGI:2139024
  NCBI Gene: 99041
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:147203461-147204713 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 72.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139024	lncRNA gene	Chr2:147199293-147204825 (-)
129S1/SvImJ	ENSMUSG00200031290	lncRNA gene	Chr2:144312015-144317353 (-)
A/J	ENSMUSG00195021829	lncRNA gene	Chr2:144444867-144450222 (-)
AKR/J	ENSMUSG00220045884	lncRNA gene	Chr2:144020967-144026307 (-)
BALB/cJ	ENSMUSG00180046051	lncRNA gene	Chr2:144106474-144111829 (-)
C3H/HeJ	ENSMUSG00175045425	lncRNA gene	Chr2:144653353-144658721 (-)
C57BL/6NJ	ENSMUSG00215033553	lncRNA gene	Chr2:144161830-144167169 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003278	antisense lncRNA gene	Chr2:139523373-139524267 (-)
CAST/EiJ	ENSTCUG00005043498	lncRNA gene	Chr2:143297510-143302790 (-)
CBA/J	ENSMUSG00210045974	lncRNA gene	Chr2:144572611-144577969 (-)
DBA/2J	ENSMUSG00185048330	lncRNA gene	Chr2:144190710-144196049 (-)
FVB/NJ	ENSMUSG00205040930	lncRNA gene	Chr2:143376886-143382254 (-)
JF1/MsJ	ENSUMUG00000045968	lncRNA gene	Chr2:143980835-143986170 (-)
LP/J	ENSMUSG00230036204	lncRNA gene	Chr2:145894329-145899668 (-)
NOD/ShiLtJ	ENSMUSG00190041911	lncRNA gene	Chr2:144242409-144247783 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010047609	lncRNA gene	Chr2:144006321-144011650 (-)
SPRET/EiJ	ENSMSPG00010028625	lncRNA gene	Chr2:146488927-146494271 (-)
WSB/EiJ	ENSIUOG00005047399	lncRNA gene	Chr2:144011865-144017213 (-)

Homology

• Gene Tree
  Pax1dt
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Pax1dt
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a knock-out allele are viable and fertile and exhibit no overt phenotype.

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  597
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000087521 (Evidence)
• NCBI Gene
  99041

Representative Sequences			Length	Strain/Species
genomic	99041	NCBI Gene Model | MGI Sequence Detail	1253	C57BL/6J
transcript	NR_040330	RefSeq | MGI Sequence Detail	753	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3651327, MGI:7567945

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Gene Ontology 1

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:239387 Stafford DA, et al., Deletion of the sclerotome-enriched lncRNA PEAT augments ribosomal protein expression. Proc Natl Acad Sci U S A. 2017 Jan 03;114(1):101-106

TSS for Pax1dt:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26632	Chr2:147204355-147204368 (-)	351 bp