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Chst10 Gene Detail
Summary
  • Symbol
    Chst10
  • Name
    carbohydrate sulfotransferase 10
  • Synonyms
    Hnk-1st, ST
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138283
    NCBI Gene: 98388
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:38902948-38937242 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 17.24 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    434 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138283
 protein coding gene Chr1:38902948-38937256 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015952
 protein coding gene Chr1:37557132-37598491 (-)
A/J MGP_AJ_G0015936
 protein coding gene Chr1:36526340-36560030 (-)
AKR/J MGP_AKRJ_G0015891
 protein coding gene Chr1:37018895-37054915 (-)
BALB/cJ MGP_BALBcJ_G0015890
 protein coding gene Chr1:36166395-36208348 (-)
C3H/HeJ MGP_C3HHeJ_G0015723
 protein coding gene Chr1:37257376-37290998 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016343
 protein coding gene Chr1:39154920-39194298 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014065
 protein coding gene Chr1:33492316-33525873 (-)
CAST/EiJ MGP_CASTEiJ_G0015304
 protein coding gene Chr1:37141162-37176249 (-)
CBA/J MGP_CBAJ_G0015695
 protein coding gene Chr1:40234204-40290496 (-)
DBA/2J MGP_DBA2J_G0015796
 protein coding gene Chr1:35817545-35851414 (-)
FVB/NJ MGP_FVBNJ_G0015798
 protein coding gene Chr1:35345550-35380653 (-)
LP/J MGP_LPJ_G0015866
 protein coding gene Chr1:37905378-37950150 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015818
 protein coding gene Chr1:42361232-42399450 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016390
 protein coding gene Chr1:37109823-37148924 (-)
PWK/PhJ MGP_PWKPhJ_G0015087
 protein coding gene Chr1:35610123-35645563 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014869
 protein coding gene Chr1:37047579-37080134 (-)
WSB/EiJ MGP_WSBEiJ_G0015366
 protein coding gene Chr1:37066920-37102184 (-)



Homology
more
  • Human Ortholog
    CHST10, carbohydrate sulfotransferase 10
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CHST10, carbohydrate sulfotransferase 10
  • Synonyms
    HNK1ST, HNK-1ST
  • Links
    NCBI Gene ID: 9486
    neXtProt AC: NX_O43529
    UniProt: O43529

  • Chr Location
    2q11.2; chr2:100391860-100417668 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    18 phenotypes from 3 alleles in 3 genetic backgrounds
    1 images
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous mutation of this gene results in altered synaptic transmission and long term potentiation. Mutant animals exhibit impaired spatial learning and long term memory deficits. Mice homozygous for a different knock-out allele exhibit reduced male and female fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    15
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    7
  • cDNA Data
    44
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026080 Ensembl Gene Model | MGI Sequence Detail 34295 C57BL/6J ±  kb
    transcript ENSMUST00000194361 Ensembl | MGI Sequence Detail 2996 Not Applicable  
    polypeptide ENSMUSP00000141295 Ensembl | MGI Sequence Detail 356 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 46
      cDNA 44
      Primer pair 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2138490
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 3
      Gene Ontology 7
      Phenotypes 13
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory