Kifc5c-ps Pseudogene Detail

Summary

• Symbol
  Kifc5c-ps
• Name
  kinesin family member C5C, pseudogene
• Synonyms
  Kifc5c, kinesin family c-terminal 5C

• Feature Type
  pseudogene
• IDs
  MGI:2137415
  NCBI Gene: 94118
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:117430258-117431787 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 66.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2137415	pseudogene	Chr10:117429970-117431787 (+)
129S1/SvImJ	ENSMUSG00200026426	pseudogene	Chr10:113835083-113836612 (+)
A/J	ENSMUSG00195023384	pseudogene	Chr10:114273440-114274969 (+)
AKR/J	ENSMUSG00220015089	pseudogene	Chr10:113849128-113850657 (+)
BALB/cJ	ENSMUSG00180018657	pseudogene	Chr10:114290326-114291855 (+)
C3H/HeJ	ENSMUSG00175025904	pseudogene	Chr10:114232535-114234064 (+)
C57BL/6NJ	ENSMUSG00215023557	pseudogene	Chr10:113933700-113935229 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036825	pseudogene	Chr10:110349492-110351036 (+)
CAST/EiJ	ENSTCUG00005034233	pseudogene	Chr10:113234696-113236225 (+)
CBA/J	ENSMUSG00210021863	pseudogene	Chr10:114082145-114083674 (+)
DBA/2J	ENSMUSG00185009694	pseudogene	Chr10:114208149-114209678 (+)
FVB/NJ	ENSMUSG00205028561	pseudogene	Chr10:113536377-113537906 (+)
JF1/MsJ	ENSUMUG00000024817	pseudogene	Chr10:115497109-115498637 (+)
LP/J	ENSMUSG00230026732	pseudogene	Chr10:116155163-116156692 (+)
NOD/ShiLtJ	ENSMUSG00190019449	pseudogene	Chr10:114334828-114336357 (+)
NZO/HlLtJ	ENSMUSG00225018575	pseudogene	Chr10:120415343-120416872 (+)
PWK/PhJ	ENSLUMG00010014237	pseudogene	Chr10:113892730-113894265 (+)
SPRET/EiJ	ENSMSPG00010016132	pseudogene	Chr10:115832772-115834289 (+)
WSB/EiJ	ENSIUOG00005014720	pseudogene	Chr10:113928466-113929995 (+)

Homology

• Gene Tree
  Kifc5c-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Kifc5c-ps
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000043800 (Evidence)
• NCBI Gene
  94118

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000043800	Ensembl Gene Model | MGI Sequence Detail	1530	C57BL/6J
transcript	ENSMUST00000179040	Ensembl | MGI Sequence Detail	1530	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87