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Trim11 Gene Detail
Summary
  • Symbol
    Trim11
  • Name
    tripartite motif-containing 11
  • Feature Type
    protein coding gene
  • IDs
    MGI:2137355
    NCBI Gene: 94091
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:58868919-58882284 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 36.40 cM, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    204 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2137355
 protein coding gene Chr11:58865054-58882288 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018386
 protein coding gene Chr11:58760014-58773143 (+)
A/J MGP_AJ_G0018355
 protein coding gene Chr11:56519500-56534096 (+)
AKR/J MGP_AKRJ_G0018325
 protein coding gene Chr11:58420155-58433305 (+)
BALB/cJ MGP_BALBcJ_G0018326
 protein coding gene Chr11:56888771-56901904 (+)
C3H/HeJ MGP_C3HHeJ_G0018139
 protein coding gene Chr11:58315248-58328551 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018778
 protein coding gene Chr11:60635906-60649076 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016423
 protein coding gene Chr11:53792460-53806273 (+)
CAST/EiJ MGP_CASTEiJ_G0017697
 protein coding gene Chr11:58424753-58438081 (+)
CBA/J MGP_CBAJ_G0018113
 protein coding gene Chr11:63280794-63294171 (+)
DBA/2J MGP_DBA2J_G0018222
 protein coding gene Chr11:56197717-56211022 (+)
FVB/NJ MGP_FVBNJ_G0018213
 protein coding gene Chr11:55845325-55858634 (+)
LP/J MGP_LPJ_G0018295
 protein coding gene Chr11:59375700-59388839 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018237
 protein coding gene Chr11:64436585-64450692 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018819
 protein coding gene Chr11:58426663-58439792 (+)
PWK/PhJ MGP_PWKPhJ_G0017467
 protein coding gene Chr11:56782709-56796396 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017260
 protein coding gene Chr11:58232891-58246018 (+)
WSB/EiJ MGP_WSBEiJ_G0017747
 protein coding gene Chr11:58111072-58124245 (+)



Homology
more
  • Human Ortholog
    TRIM11, tripartite motif containing 11
  • Vertebrate Orthologs
    19
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM11, tripartite motif containing 11
  • Synonyms
    BIA1, RNF92
  • Links
    NCBI Gene ID: 81559
    neXtProt AC: NX_Q96F44
    UniProt: Q96F44

  • Chr Location
    1q42.13; chr1:228393673-228406835 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype from multigenic genotypes
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    37
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    829
  • Tissues
    61
  • cDNA Data
    85
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020455 Ensembl Gene Model | MGI Sequence Detail 13366 C57BL/6J ±  kb
transcript ENSMUST00000108810 Ensembl | MGI Sequence Detail 2301 Not Applicable  
polypeptide ENSMUSP00000104438 Ensembl | MGI Sequence Detail 483 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 90
    cDNA 87
    Primer pair 2
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 39
    Developmental Gene Expression 5
    Gene Ontology 10
    Phenotypes 7
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:329445 Xiao Q, et al., Regulation of KDM5C stability and enhancer reprogramming in breast cancer. Cell Death Dis. 2022 Oct 3;13(10):843
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory