Niban1 MGI Mouse Gene Detail - MGI:2137237 - niban apoptosis regulator 1

Symbol

Niban1
Name

niban apoptosis regulator 1
Synonyms

Fam129a, Niban

Feature Type

protein coding gene
IDs

MGI:2137237
NCBI Gene: 63913
Alliance

gene page
Transcription Start Sites

10 TSS

Sequence Map

Chr1:151447124-151596791 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 64.21 cM
Mapping Data

1 experiment

SNPs within 2kb

1953 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2137237	protein coding gene	Chr1:151446937-151597690 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016583	protein coding gene	Chr1:156305871-156468891 (+)
A/J	MGP_AJ_G0016565	protein coding gene	Chr1:149998328-150153753 (+)
AKR/J	MGP_AKRJ_G0016530	protein coding gene	Chr1:154617680-154786343 (+)
BALB/cJ	MGP_BALBcJ_G0016525	protein coding gene	Chr1:150569389-150723053 (+)
C3H/HeJ	MGP_C3HHeJ_G0016350	protein coding gene	Chr1:154742711-154905152 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016986	protein coding gene	Chr1:161720327-161884914 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014695	protein coding gene	Chr1:142333378-142486395 (+)
CAST/EiJ	MGP_CASTEiJ_G0015929	protein coding gene	Chr1:154187711-154351395 (+)
CBA/J	MGP_CBAJ_G0016324	protein coding gene	Chr1:167395582-167578597 (+)
DBA/2J	MGP_DBA2J_G0016430	protein coding gene	Chr1:149039963-149194492 (+)
FVB/NJ	MGP_FVBNJ_G0016428	protein coding gene	Chr1:147497243-147653061 (+)
LP/J	MGP_LPJ_G0016501	protein coding gene	Chr1:157373861-157543430 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016454	protein coding gene	Chr1:175102335-175262858 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017022	protein coding gene	Chr1:154383007-154546469 (+)
PWK/PhJ	MGP_PWKPhJ_G0015715	protein coding gene	Chr1:148008314-148166404 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015502	protein coding gene	Chr1:153217844-153382544 (+)
WSB/EiJ	MGP_WSBEiJ_G0015992	protein coding gene	Chr1:154477233-154638316 (+)

Human Ortholog

NIBAN1, niban apoptosis regulator 1

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

NIBAN1, niban apoptosis regulator 1
Synonyms

C1orf24, FAM129A, GIG39, NIBAN
Links

HGNC:16784

NCBI Gene ID: 116496

neXtProt AC: NX_Q9BZQ8

UniProt: Q9BZQ8
Chr Location

1q25.3; chr1:184790724-184974508 (-) GRCh38

Alliance of Genome Resources

Niban1 stringent orthology
1 human;1 mouse;1 rat;2 zebrafish
HCOP

vertebrate homology predictions: NIBAN1
Gene Tree

Niban1

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Phenotype Summary

8 phenotypes from 2 alleles in 2 genetic backgrounds
11 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

20
Chemically induced (other)

2
Endonuclease-mediated

1
Gene trapped

14
Targeted

3
Genomic Mutations

2 involving Niban1
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

50 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a knock-out allele are viable with no overt phenotypic abnormalities.

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All GO Annotations

9
GO References

3

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

771
Tissues

58
cDNA Data

18
Literature Summary

4

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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Niban1 interacts with 367 markers (Mir1a-1, Mir1a-2, Mir1b, ...) View All

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All Sequences

73
RefSeq

6
UniProt

5
CCDS

CCDS48393.1

Ensembl

ENSMUSG00000026483 (Evidence)
NCBI Gene

63913

			Length	Strain/Species	Flank
genomic	63913	NCBI Gene Model \| MGI Sequence Detail	149668	C57BL/6J	± kb
transcript	NM_022018	RefSeq \| MGI Sequence Detail	6440	C57BL/6
polypeptide	Q3UW53	UniProt \| EBI \| MGI Sequence Detail	926	Not Applicable

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UniProt

5 Sequences
Protein Ontology

PR:000030908 protein Niban 1

(term hierarchy)
InterPro Domains

IPR026088 Niban-like

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All nucleic 20

cDNA 18

Primer pair 1

Other 1

Microarray probesets 4

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MGI:2138185, MGI:2138451

Summaries

All 39

Developmental Gene Expression 4

Gene Ontology 3

Phenotypes 11
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:272619 Aydogdu N, et al., TBX2 and TBX3 act downstream of canonical WNT signaling in patterning and differentiation of the mouse ureteric mesenchyme. Development. 2018 Nov 26;145(23):dev171827

TSS for Niban1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9392	Chr1:151446884-151446936 (+)	-214 bp
Tssr9393	Chr1:151447180-151447191 (+)	62 bp
Tssr9394	Chr1:151447192-151447222 (+)	83 bp
Tssr9395	Chr1:151447232-151447243 (+)	114 bp
Tssr9396	Chr1:151447992-151447996 (+)	870 bp
Tssr9397	Chr1:151479324-151479328 (+)	32,202 bp
Tssr9398	Chr1:151508101-151508104 (+)	60,979 bp
Tssr9399	Chr1:151552923-151552933 (+)	105,804 bp
Tssr9400	Chr1:151553751-151553759 (+)	106,631 bp
Tssr9401	Chr1:151594347-151594397 (+)	147,248 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/19/2023 MGI 6.22