Mdm4-ps Pseudogene Detail

Summary

• Symbol
  Mdm4-ps
• Name
  MDM4 regulator of p53, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:2136991
  NCBI Gene: 94054
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:127162010-127165558 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 50.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  18
• PCR
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2136991	pseudogene	ChrX:127162010-127168673 (+)
129S1/SvImJ	ENSMUSG00200011548	pseudogene	ChrX:106154520-106161033 (+)
A/J	ENSMUSG00195020912	pseudogene	ChrX:110035368-110041889 (+)
AKR/J	ENSMUSG00220013227	pseudogene	ChrX:103671893-103678402 (+)
BALB/cJ	ENSMUSG00180019534	pseudogene	ChrX:106455034-106461551 (+)
C3H/HeJ	ENSMUSG00175021567	pseudogene	ChrX:110303007-110309532 (+)
C57BL/6NJ	ENSMUSG00215002725	pseudogene	ChrX:106838272-106844785 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008004	pseudogene	ChrX:107545901-107552402 (+)
CBA/J	ENSMUSG00210020887	pseudogene	ChrX:107209155-107215676 (+)
DBA/2J	ENSMUSG00185024275	pseudogene	ChrX:121134618-121141131 (+)
FVB/NJ	ENSMUSG00205012404	pseudogene	ChrX:105860259-105866772 (+)
JF1/MsJ	ENSUMUG00000010815	pseudogene	ChrX:140331278-140337807 (+)
LP/J	ENSMUSG00230004067	pseudogene	ChrX:127808720-127815233 (+)
NOD/ShiLtJ	ENSMUSG00190014741	pseudogene	ChrX:106627848-106634357 (+)
NZO/HlLtJ	ENSMUSG00225037187	pseudogene	ChrX:132474075-132480588 (+)
PWK/PhJ	ENSLUMG00010009206	pseudogene	ChrX:104945195-104951702 (+)
SPRET/EiJ	ENSMSPG00010021702	pseudogene	ChrX:109552940-109559496 (+)
WSB/EiJ	ENSIUOG00005005126	pseudogene	ChrX:107428389-107434897 (+)

Homology

• Gene Tree
  Mdm4-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000081739 (Evidence)
• NCBI Gene
  94054

Representative Sequences			Length	Strain/Species
genomic	94054	NCBI Gene Model | MGI Sequence Detail	3549	C57BL/6J

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:70147 Parant JM, et al., Organization, expression, and localization of the murine mdmx gene and pseudogene. Gene. 2001 May 30;270(1-2):277-83
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Mdm4-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161931	ChrX:127162009-127162049 (+)	19 bp
Tssr161932	ChrX:127162466-127162485 (+)	466 bp
Tssr161933	ChrX:127162498-127162513 (+)	496 bp