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Nop58 Gene Detail
Summary
  • Symbol
    Nop58
  • Name
    NOP58 ribonucleoprotein
  • Synonyms
    MSSP, Nol5, SIK similar protein
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933184
    NCBI Gene: 55989
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:59724134-59750669 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 30.38 cM, cytoband C2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    129 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933184
 protein coding gene Chr1:59724130-59758203 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016069
 protein coding gene Chr1:59665064-59700795 (+)
A/J MGP_AJ_G0016052
 protein coding gene Chr1:57590745-57624832 (+)
AKR/J MGP_AKRJ_G0016008
 protein coding gene Chr1:59209779-59243889 (+)
BALB/cJ MGP_BALBcJ_G0016007
 protein coding gene Chr1:57619448-57653469 (+)
C3H/HeJ MGP_C3HHeJ_G0015839
 protein coding gene Chr1:59446856-59482866 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016460
 protein coding gene Chr1:62016228-62053650 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014181
 protein coding gene Chr1:53801281-53828648 (+)
CAST/EiJ MGP_CASTEiJ_G0015421
 protein coding gene Chr1:58625740-58660550 (+)
CBA/J MGP_CBAJ_G0015811
 protein coding gene Chr1:63950385-63987293 (+)
DBA/2J MGP_DBA2J_G0015912
 protein coding gene Chr1:57017759-57051905 (+)
FVB/NJ MGP_FVBNJ_G0015914
 protein coding gene Chr1:56319537-56353533 (+)
LP/J MGP_LPJ_G0015984
 protein coding gene Chr1:60559482-60596116 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015934
 protein coding gene Chr1:66867957-66906409 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016507
 protein coding gene Chr1:59111244-59146558 (+)
PWK/PhJ MGP_PWKPhJ_G0015208
 protein coding gene Chr1:56354020-56389689 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014988
 protein coding gene Chr1:58648906-58682626 (+)
WSB/EiJ MGP_WSBEiJ_G0015484
 protein coding gene Chr1:58815807-58850249 (+)



Homology
more
  • Human Ortholog
    NOP58, NOP58 ribonucleoprotein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NOP58, NOP58 ribonucleoprotein
  • Synonyms
    HSPC120, NOP5, NOP5/NOP58
  • Links
    NCBI Gene ID: 51602
    neXtProt AC: NX_Q9Y2X3
    UniProt: Q9Y2X3

  • Chr Location
    2q33.1; chr2:202265736-202303661 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    711
  • Tissues
    5
  • cDNA Data
    129
  • Literature Summary
    3
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 55989 NCBI Gene Model | MGI Sequence Detail 26536 C57BL/6J ±  kb
transcript NM_001420739 RefSeq | MGI Sequence Detail 2911 C57BL/6  
polypeptide Q6DFW4 UniProt | EBI | MGI Sequence Detail 536 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 130
    cDNA 129
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 38
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 11
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:286260 Wang X, et al., LARP7-Mediated U6 snRNA Modification Ensures Splicing Fidelity and Spermatogenesis in Mice. Mol Cell. 2020 Mar 5;77(5):999-1013.e6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/19/2023
MGI 6.22 		The Jackson Laboratory