Cyp4a28-ps Pseudogene Detail

Summary

• Symbol
  Cyp4a28-ps
• Name
  cytochrome P450, family 4, subfamily a, polypeptide 28, pseudogene
• Synonyms
  Cyp4a21, Cyp4a21-ps, OTTMUSG00000008613

• Feature Type
  pseudogene
• IDs
  MGI:1932405
  NCBI Gene: 547220
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:114995765-115013703 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 52.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  603 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1932405	pseudogene	Chr4:114995761-115013703 (-)
129S1/SvImJ	ENSMUSG00200050135	pseudogene	Chr4:108878336-108896274 (-)
A/J	ENSMUSG00195047236	pseudogene	Chr4:110211266-110229205 (-)
AKR/J	ENSMUSG00220012592	pseudogene	Chr4:109481638-109515594 (-)
BALB/cJ	ENSMUSG00180048319	pseudogene	Chr4:108225353-108243289 (-)
C3H/HeJ	ENSMUSG00175042698	pseudogene	Chr4:109239836-109257772 (-)
C57BL/6NJ	ENSMUSG00215035126	pseudogene	Chr4:110366199-110384139 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037345	pseudogene	Chr4:105689204-105700827 (+)
CAST/EiJ	ENSTCUG00005022452	pseudogene	Chr4:109016729-109032701 (-)
CBA/J	ENSMUSG00210053306	pseudogene	Chr4:108853367-108871303 (-)
DBA/2J	ENSMUSG00185050876	pseudogene	Chr4:110374685-110392622 (-)
FVB/NJ	ENSMUSG00205045710	pseudogene	Chr4:108425027-108442959 (-)
JF1/MsJ	ENSUMUG00000048902	pseudogene	Chr4:110326998-110344927 (-)
LP/J	ENSMUSG00230046031	pseudogene	Chr4:113695701-113713639 (-)
NOD/ShiLtJ	ENSMUSG00190048610	pseudogene	Chr4:108222798-108240732 (-)
NZO/HlLtJ	ENSMUSG00225011548	pseudogene	Chr4:119183123-119201061 (-)
PWK/PhJ	ENSLUMG00010049102	pseudogene	Chr4:107721177-107739102 (-)
SPRET/EiJ	ENSMSPG00010029432	pseudogene	Chr4:109873044-109884623 (-)
WSB/EiJ	ENSIUOG00005044321	pseudogene	Chr4:108536019-108553961 (-)

Homology

• Gene Tree
  Cyp4a28-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Cyp4a28-ps
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000081823 (Evidence)
• NCBI Gene
  547220

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081823	Ensembl Gene Model | MGI Sequence Detail	17939	C57BL/6J
transcript	ENSMUST00000121884	Ensembl | MGI Sequence Detail	1477	Not Applicable

Other
Accession IDs

MGI:3651923

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:68016 Gottgens B, et al., Long-range comparison of human and mouse SCL loci: localized regions of sensitivity to restriction endonucleases correspond precisely with peaks of conserved noncoding sequences. Genome Res. 2001 Jan;11(1):87-97