Parva MGI Mouse Gene Detail - MGI:1931144

Symbol

Parva
Name

parvin, alpha
Synonyms

2010012A22Rik, 5430400F08Rik, actopaxin, CH-ILKBP

Feature Type

protein coding gene
IDs

MGI:1931144
NCBI Gene: 57342
Alliance

gene page
Transcription Start Sites

7 TSS

Sequence Map

Chr7:112027102-112190899 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 7, 58.76 cM
Mapping Data

2 experiments

SNPs within 2kb

5318 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1931144	protein coding gene	Chr7:112026712-112190899 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0032870	protein coding gene	Chr7:115999277-116177830 (+)
A/J	MGP_AJ_G0032853	protein coding gene	Chr7:113113859-113274928 (+)
AKR/J	MGP_AKRJ_G0032785	protein coding gene	Chr7:115960500-116119585 (+)
BALB/cJ	MGP_BALBcJ_G0032858	protein coding gene	Chr7:112807791-112971225 (+)
C3H/HeJ	MGP_C3HHeJ_G0032568	protein coding gene	Chr7:115951804-116120615 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0033364	protein coding gene	Chr7:120740704-120906906 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030336	protein coding gene	Chr7:114709740-114872084 (+)
CAST/EiJ	MGP_CASTEiJ_G0031896	protein coding gene	Chr7:107565895-107730840 (+)
CBA/J	MGP_CBAJ_G0032541	protein coding gene	Chr7:124712809-124896719 (+)
DBA/2J	MGP_DBA2J_G0032693	protein coding gene	Chr7:111196720-111357896 (+)
FVB/NJ	MGP_FVBNJ_G0032646	protein coding gene	Chr7:111045600-111205012 (+)
LP/J	MGP_LPJ_G0032787	protein coding gene	Chr7:117512352-117680403 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0032678	protein coding gene	Chr7:126317969-126485911 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0033384	protein coding gene	Chr7:114959629-115121910 (+)
PWK/PhJ	MGP_PWKPhJ_G0031603	protein coding gene	Chr7:104035915-104189865 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0031451	protein coding gene	Chr7:101708554-101874991 (+)
WSB/EiJ	MGP_WSBEiJ_G0032009	protein coding gene	Chr7:115820809-115988570 (+)

Human Ortholog

PARVA, parvin alpha

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

PARVA, parvin alpha
Synonyms

CH-ILKBP, MXRA2
Links

HGNC:14652

NCBI Gene ID: 55742

UniProt: Q9NVD7
Chr Location

11p15.3; chr11:12376436-12535356 (+) GRCh38

MGI Vertebrate Homology

Parva stringent orthology
1 human;1 mouse;1 rat;2 zebrafish
HCOP

vertebrate homology predictions: PARVA
Protein SuperFamily

Parvin
Gene Tree

Parva

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Phenotype Summary

30 phenotypes from 2 alleles in 2 genetic backgrounds
23 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

14
Endonuclease-mediated

2
Gene trapped

5
Radiation induced

1
Targeted

6
Genomic Mutations

1 involving Parva
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

26 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Embryos homozygous for a null allele are growth retarded and die prior to E14.5 exhibiting abnormal cardiac morphogenesis, severe vascular defects, edema, microaneurysms, hemorrhage, and severe kidney dysgenesis or agenesis.

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All GO Annotations

53
GO References

16

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

837
Tissues

117
cDNA Data

185
Literature Summary

11

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

ZFIN parvab

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All Sequences

75
RefSeq

6
UniProt

4
CCDS

CCDS40091.1

Ensembl

ENSMUSG00000030770 (Evidence)
NCBI Gene

57342

			Length	Strain/Species	Flank
genomic	57342	NCBI Gene Model \| MGI Sequence Detail	163798	C57BL/6J	± kb
transcript	NM_020606	RefSeq \| MGI Sequence Detail	4265	C57BL/6
polypeptide	Q9EPC1	UniProt \| EBI \| MGI Sequence Detail	372	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000012303 alpha-parvin

(term hierarchy)
InterPro Domains

IPR001715 Calponin homology domain

IPR036872 CH domain superfamily

IPR028433 Parvin
GlyGen

Q9EPC1 2 sites, 1 N-linked glycan (1 site), 1 O-linked glycan (1 site)

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All nucleic 188

cDNA 185

Primer pair 3

Microarray probesets 8

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MGI:1914044, MGI:1923778, MGI:2141883, MGI:2142158

Summaries

All 70

Developmental Gene Expression 11

Gene Ontology 16

Phenotypes 23
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Parva:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68573	Chr7:112026232-112026245 (+)	-863 bp
Tssr68574	Chr7:112026878-112026887 (+)	-219 bp
Tssr68575	Chr7:112026922-112026925 (+)	-178 bp
Tssr68576	Chr7:112027073-112027089 (+)	-21 bp
Tssr68577	Chr7:112027092-112027159 (+)	24 bp
Tssr68579	Chr7:112099219-112099221 (+)	72,118 bp
Tssr68580	Chr7:112118819-112118857 (+)	91,736 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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