AB041806 Gene Detail

Summary

• Symbol
  AB041806
• Name
  hypothetical protein, MNCb-2457

• Feature Type
  lncRNA gene
• IDs
  MGI:1931024
  NCBI Gene: 58213
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:138122509-138125214 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 70.23 cM, cytoband D3
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1931024	lncRNA gene	Chr4:138122509-138125214 (+)
129S1/SvImJ	ENSMUSG00200021600	lncRNA gene	Chr4:131535226-131537742 (+)
A/J	ENSMUSG00195035326	lncRNA gene	Chr4:132879454-132881982 (+)
AKR/J	ENSMUSG00220048354	lncRNA gene	Chr4:131870189-131872705 (+)
BALB/cJ	ENSMUSG00180050145	lncRNA gene	Chr4:130516185-130518714 (+)
C3H/HeJ	ENSMUSG00175047981	lncRNA gene	Chr4:131540970-131543499 (+)
C57BL/6NJ	ENSMUSG00215050480	lncRNA gene	Chr4:133064095-133066611 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003581	antisense lncRNA gene	Chr4:128076575-128079032 (+)
CAST/EiJ	ENSTCUG00005047811	lncRNA gene	Chr4:132493188-132495715 (+)
CBA/J	ENSMUSG00210053953	lncRNA gene	Chr4:131164790-131167318 (+)
DBA/2J	ENSMUSG00185051943	lncRNA gene	Chr4:132681756-132684284 (+)
FVB/NJ	ENSMUSG00205047903	lncRNA gene	Chr4:130929980-130932510 (+)
JF1/MsJ	ENSUMUG00000046567	lncRNA gene	Chr4:133385539-133388055 (+)
LP/J	ENSMUSG00230041832	lncRNA gene	Chr4:136473201-136475717 (+)
NOD/ShiLtJ	ENSMUSG00190049540	lncRNA gene	Chr4:130937533-130940049 (+)
NZO/HlLtJ	ENSMUSG00225026896	lncRNA gene	Chr4:142428610-142431126 (+)
PWK/PhJ	ENSLUMG00010050932	lncRNA gene	Chr4:130369643-130372171 (+)
SPRET/EiJ	ENSMSPG00010038537	lncRNA gene	Chr4:132418790-132421302 (+)
WSB/EiJ	ENSIUOG00005044611	lncRNA gene	Chr4:130820848-130823361 (+)

Homology

• Gene Tree
  AB041806
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  3 involving AB041806
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  640
• Tissues
  29
• cDNA Data
  1
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000046109 (Evidence)
• NCBI Gene
  58213

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000046109	Ensembl Gene Model | MGI Sequence Detail	2706	C57BL/6J
transcript	ENSMUST00000062902	Ensembl | MGI Sequence Detail	2294	Not Applicable
polypeptide	Q9JJ83	UniProt | EBI | MGI Sequence Detail	124	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 5
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:162220 Magdaleno S, et al., BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. PLoS Biol. 2006 Apr;4(4):e86