Apc-ps1 Pseudogene Detail

Summary

• Symbol
  Apc-ps1
• Name
  adenomatosis polyposis coli, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:1930261
  NCBI Gene: 79189
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:76344472-76344941 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 40.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  129 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1930261	pseudogene	Chr5:76344472-76345754 (+)
129S1/SvImJ	ENSMUSG00200001366	pseudogene	Chr5:72034891-72035360 (+)
A/J	ENSMUSG00195010837	pseudogene	Chr5:71331664-71332133 (+)
AKR/J	ENSMUSG00220015072	pseudogene	Chr5:71444831-71445300 (+)
BALB/cJ	ENSMUSG00180024968	pseudogene	Chr5:71106360-71106829 (+)
C3H/HeJ	ENSMUSG00175004282	pseudogene	Chr5:73150199-73150668 (+)
C57BL/6NJ	ENSMUSG00215000496	pseudogene	Chr5:71920944-71921413 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036887	pseudogene	Chr5:69110029-69110502 (+)
CAST/EiJ	ENSTCUG00005013712	pseudogene	Chr5:70895481-70895950 (+)
CBA/J	ENSMUSG00210000639	pseudogene	Chr5:72088192-72088661 (+)
DBA/2J	ENSMUSG00185017106	pseudogene	Chr5:73918137-73918606 (+)
FVB/NJ	ENSMUSG00205031750	pseudogene	Chr5:70854685-70855154 (+)
JF1/MsJ	ENSUMUG00000006795	pseudogene	Chr5:78399991-78400431 (+)
LP/J	ENSMUSG00230022580	pseudogene	Chr5:78608890-78609359 (+)
NOD/ShiLtJ	ENSMUSG00190007701	pseudogene	Chr5:71038511-71038980 (+)
NZO/HlLtJ	ENSMUSG00225034422	pseudogene	Chr5:83655614-83656083 (+)
PWK/PhJ	ENSLUMG00010007732	pseudogene	Chr5:70992096-70992538 (+)
SPRET/EiJ	ENSMSPG00010010300	pseudogene	Chr5:72982789-72983258 (+)
WSB/EiJ	ENSIUOG00005018447	pseudogene	Chr5:73868099-73868568 (+)

Homology

• Gene Tree
  Apc-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Apc-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000083152 (Evidence)
• NCBI Gene
  79189

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083152	Ensembl Gene Model | MGI Sequence Detail	470	C57BL/6J
transcript	ENSMUST00000119356	Ensembl | MGI Sequence Detail	470	Not Applicable

Other
Accession IDs

MGI:3802127

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:66232 Wilsbacher LD, et al., The mouse clock locus: sequence and comparative analysis of 204 Kb from mouse chromosome 5. Genome Res. 2000 Dec;10(12):1928-40