1110004F10Rik MGI Mouse Gene Detail - MGI:1929274

Symbol

1110004F10Rik
Name

RIKEN cDNA 1110004F10 gene
Synonyms

sid2057

Feature Type

protein coding gene
IDs

MGI:1929274
NCBI Gene: 56372
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr7:115680596-115704445 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 7, 61.42 cM, cytoband F3
Mapping Data

2 experiments

SNPs within 2kb

440 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1929274	protein coding gene	Chr7:115638632-115704445 (+)
129S1/SvImJ	ENSMUSG00200021471	protein coding gene	Chr7:102225566-102237506 (+)
A/J	ENSMUSG00195039277	protein coding gene	Chr7:106739118-106751027 (+)
AKR/J	ENSMUSG00220034591	protein coding gene	Chr7:100149594-100161505 (+)
BALB/cJ	ENSMUSG00180032212	protein coding gene	Chr7:103403706-103415616 (+)
C3H/HeJ	ENSMUSG00175020510	protein coding gene	Chr7:104015632-104027572 (+)
C57BL/6NJ	ENSMUSG00215036203	protein coding gene	Chr7:103356618-103368527 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030354	protein coding gene	Chr7:118265983-118327320 (+)
CAST/EiJ	ENSTCUG00005038678	protein coding gene	Chr7:106690769-106702908 (+)
CBA/J	ENSMUSG00210024687	protein coding gene	Chr7:103842122-103854062 (+)
DBA/2J	ENSMUSG00185021650	protein coding gene	Chr7:108192637-108204577 (+)
FVB/NJ	ENSMUSG00205016121	protein coding gene	Chr7:103817083-103828991 (+)
JF1/MsJ	ENSUMUG00000034189	protein coding gene	Chr7:113257436-113269381 (+)
LP/J	ENSMUSG00230037365	protein coding gene	Chr7:114311597-114323537 (+)
NOD/ShiLtJ	ENSMUSG00190025880	protein coding gene	Chr7:104033451-104045359 (+)
NZO/HlLtJ	ENSMUSG00225039809	protein coding gene	Chr7:112551728-112563637 (+)
PWK/PhJ	ENSLUMG00010010794	protein coding gene	Chr7:102403530-102415470 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005010200	protein coding gene	Chr7:104689494-104701405 (+)

Human Ortholog

C11orf58, chromosome 11 open reading frame 58

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C11orf58, chromosome 11 open reading frame 58
Synonyms

Hero20, IMAGE145052, SMAP
Links

HGNC:16990

NCBI Gene ID: 10944

UniProt: O00193
Chr Location

11p15.2; chr11:16613132-16758340 (+) GRCh38

MGI Vertebrate Homology

1110004F10Rik stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: C11orf58
Gene Tree

1110004F10Rik

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

9
Gene trapped

5
Targeted

4
Find Mice (IMSR)

13 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

163
Literature Summary

1

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase c4h11orf58

ZFIN zgc:56106

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All Sequences

73
RefSeq

17
UniProt

6
CCDS

CCDS21766.1

Ensembl

ENSMUSG00000030663 (Evidence)
NCBI Gene

56372

			Length	Strain/Species	Flank
genomic	56372	NCBI Gene Model \| MGI Sequence Detail	23850	C57BL/6J	± kb
transcript	NR_184775	RefSeq \| MGI Sequence Detail	1620	C57BL/6
polypeptide	Q9R0P4	UniProt \| EBI \| MGI Sequence Detail	181	Not Applicable

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UniProt

6 Sequences
Protein Ontology

PR:000015257 small acidic protein

(term hierarchy)
InterPro Domains

IPR026714 Small acidic protein

IPR028124 Small acidic protein-like domain
GlyGen

Q9R0P4 1 site, 1 O-linked glycan (1 site)

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All nucleic 163

cDNA 163

Microarray probesets 3

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MGI:1923535

Summaries

All 29

Developmental Gene Expression 1

Gene Ontology 1

Phenotypes 6
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for 1110004F10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68688	Chr7:115692531-115692564 (+)	11,952 bp
Tssr68689	Chr7:115692574-115692607 (+)	11,995 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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