4930581F22Rik MGI Mouse Gene Detail - MGI:1926184

Symbol

4930581F22Rik
Name

RIKEN cDNA 4930581F22 gene

Feature Type

lncRNA gene
IDs

MGI:1926184
NCBI Gene: 78934
Alliance

genome feature page
Transcription Start Sites

3 TSS

Sequence Map

Chr9:35028024-35042218 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 9, 19.68 cM, cytoband A5.3
Mapping Data

3 experiments

SNPs within 2kb

397 from dbSNP Build 142
Strain Annotations

29

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926184	lncRNA gene	Chr9:35027950-35042220 (+)
129S1/SvImJ	ENSMUSG00200039960	lncRNA gene	Chr9:32009448-32023640 (+)
129S1/SvImJ	ENSMUSG00200037824	protein coding gene	Chr9:32009462-32025168 (+)
A/J	ENSMUSG00195044176	protein coding gene	Chr9:31800885-31816591 (+)
A/J	ENSMUSG00195050998	lncRNA gene	Chr9:31800871-31815063 (+)
AKR/J	ENSMUSG00220046786	lncRNA gene	Chr9:31840300-31854493 (+)
AKR/J	ENSMUSG00220044150	protein coding gene	Chr9:31840314-31856021 (+)
BALB/cJ	ENSMUSG00180047034	lncRNA gene	Chr9:31929192-31943384 (+)
BALB/cJ	ENSMUSG00180040817	protein coding gene	Chr9:31929206-31944912 (+)
C3H/HeJ	ENSMUSG00175047925	lncRNA gene	Chr9:31930426-31944618 (+)
C3H/HeJ	ENSMUSG00175040816	protein coding gene	Chr9:31930440-31946146 (+)
C57BL/6NJ	ENSMUSG00215038993	lncRNA gene	Chr9:31927661-31941855 (+)
C57BL/6NJ	ENSMUSG00215022935	protein coding gene	Chr9:31927675-31943383 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013852	unclassified non-coding RNA gene	Chr9:30756768-30770940 (+)
CAST/EiJ	ENSTCUG00005045009	lncRNA gene	Chr9:31902246-31916493 (+)
CBA/J	ENSMUSG00210039745	protein coding gene	Chr9:31941720-31957426 (+)
CBA/J	ENSMUSG00210045555	lncRNA gene	Chr9:31941711-31955898 (+)
DBA/2J	ENSMUSG00185034853	protein coding gene	Chr9:31980330-31996037 (+)
DBA/2J	ENSMUSG00185038216	lncRNA gene	Chr9:31980316-31994509 (+)
FVB/NJ	ENSMUSG00205036416	protein coding gene	Chr9:32295957-32311663 (+)
FVB/NJ	ENSMUSG00205044846	lncRNA gene	Chr9:32295943-32310135 (+)
JF1/MsJ	ENSUMUG00000046111	lncRNA gene	Chr9:32172410-32186637 (+)
LP/J	ENSMUSG00230035087	lncRNA gene	Chr9:32407270-32421497 (+)
NOD/ShiLtJ	ENSMUSG00190022526	protein coding gene	Chr9:32057809-32073516 (+)
NOD/ShiLtJ	ENSMUSG00190038251	lncRNA gene	Chr9:32057795-32071988 (+)
NZO/HlLtJ	ENSMUSG00225022604	lncRNA gene	Chr9:32375282-32389511 (+)
PWK/PhJ	ENSLUMG00010046206	lncRNA gene	Chr9:32054272-32068466 (+)
SPRET/EiJ	ENSMSPG00010039410	lncRNA gene	Chr9:32480996-32495106 (+)
WSB/EiJ	ENSIUOG00005043863	lncRNA gene	Chr9:31502437-31516628 (+)

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Gene Tree

4930581F22Rik

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

604
Tissues

4
cDNA Data

5
Literature Summary

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

65
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000070315 (Evidence)
NCBI Gene

78934

			Length	Strain/Species	Flank
genomic	78934	NCBI Gene Model \| MGI Sequence Detail	14195	C57BL/6J	± kb
transcript	NR_029475	RefSeq \| MGI Sequence Detail	2402	C57BL/6
polypeptide	Q9D2E5	UniProt \| EBI \| MGI Sequence Detail	142	Not Applicable

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UniProt

1 Sequence

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All nucleic 6

cDNA 5

Primer pair 1

Microarray probesets 3

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MGI:2143353

Summaries

All 17

Developmental Gene Expression 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:356411 Bao J, et al., Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline. Biol Reprod. 2013 Nov;89(5):107

TSS for 4930581F22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84325	Chr9:35028036-35028063 (+)	26 bp
Tssr84326	Chr9:35028226-35028242 (+)	210 bp
Tssr84327	Chr9:35039161-35039172 (+)	11,143 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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