4930420G21Rik Gene Detail

Summary

• Symbol
  4930420G21Rik
• Name
  RIKEN cDNA 4930420G21 gene
• Synonyms
  Gm49687

• Feature Type
  lncRNA gene
• IDs
  MGI:1926174
  NCBI Gene: 78924
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:88173497-88272191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 50.87 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  3413 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926174	lncRNA gene	Chr16:88173441-88272191 (+)
129S1/SvImJ	ENSMUSG00200038804	lncRNA gene	Chr16:85050488-85117281 (+)
A/J	ENSMUSG00195029839	lncRNA gene	Chr16:84852494-84919336 (+)
AKR/J	ENSMUSG00220016374	lncRNA gene	Chr16:85041956-85108792 (+)
BALB/cJ	ENSMUSG00180015905	lncRNA gene	Chr16:84925962-84992778 (+)
C3H/HeJ	ENSMUSG00175016951	lncRNA gene	Chr16:85264042-85330891 (+)
C57BL/6NJ	ENSMUSG00215036496	lncRNA gene	Chr16:85054457-85121293 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020894	lncRNA gene	Chr16:84623583-84689962 (+)
CBA/J	ENSMUSG00210042872	lncRNA gene	Chr16:85151705-85218514 (+)
DBA/2J	ENSMUSG00185035416	lncRNA gene	Chr16:85106113-85172922 (+)
FVB/NJ	ENSMUSG00205030409	lncRNA gene	Chr16:84903199-84970032 (+)
JF1/MsJ	ENSUMUG00000046789	lncRNA gene	Chr16:85250525-85328774 (+)
LP/J	ENSMUSG00230036252	lncRNA gene	Chr16:87611492-87678281 (+)
NOD/ShiLtJ	ENSMUSG00190030021	lncRNA gene	Chr16:85080280-85147098 (+)
NZO/HlLtJ	ENSMUSG00225031363	lncRNA gene	Chr16:90796100-90862993 (+)
PWK/PhJ	ENSLUMG00010014525	lncRNA gene	Chr16:84885220-84966246 (+)
SPRET/EiJ	ENSMSPG00010033538	lncRNA gene	Chr16:86011792-86079541 (+)
WSB/EiJ	ENSIUOG00005021097	lncRNA gene	Chr16:85047813-85114599 (+)

Homology

• Gene Tree
  4930420G21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Genomic Mutations
  2 involving 4930420G21Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000116885 (Evidence)
• NCBI Gene
  78924

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116885	Ensembl Gene Model | MGI Sequence Detail	98695	C57BL/6J
transcript	ENSMUST00000231793	Ensembl | MGI Sequence Detail	2396	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:6215137

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:223383 Arbogast T, et al., Deletion of the App-Runx1 region in mice models human partial monosomy 21. Dis Model Mech. 2015 Jun;8(6):623-34