4930455M05Rik Gene Detail

Summary

• Symbol
  4930455M05Rik
• Name
  RIKEN cDNA 4930455M05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926168
  NCBI Gene: 78918
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:59566922-59570975 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926168	lncRNA gene	Chr13:59566922-59570975 (+)
129S1/SvImJ	ENSMUSG00200016983	lncRNA gene	Chr13:56449802-56453855 (+)
A/J	ENSMUSG00195047137	lncRNA gene	Chr13:55924422-55928468 (+)
AKR/J	ENSMUSG00220044721	lncRNA gene	Chr13:55468913-55472968 (+)
BALB/cJ	ENSMUSG00180017534	lncRNA gene	Chr13:56179232-56183279 (+)
C3H/HeJ	ENSMUSG00175045032	lncRNA gene	Chr13:55966478-55970535 (+)
C57BL/6NJ	ENSMUSG00215039766	lncRNA gene	Chr13:55974096-55978152 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041271	lncRNA gene	Chr13:56356424-56360426 (+)
CBA/J	ENSMUSG00210043374	lncRNA gene	Chr13:56171324-56175373 (+)
DBA/2J	ENSMUSG00185017337	lncRNA gene	Chr13:57015514-57018483 (+)
FVB/NJ	ENSMUSG00205045633	lncRNA gene	Chr13:55780735-55783663 (+)
JF1/MsJ	ENSUMUG00000040606	lncRNA gene	Chr13:56373458-56377487 (+)
LP/J	ENSMUSG00230034525	lncRNA gene	Chr13:66362622-66366663 (+)
NOD/ShiLtJ	ENSMUSG00190039844	lncRNA gene	Chr13:56027350-56031405 (+)
NZO/HlLtJ	ENSMUSG00225034883	lncRNA gene	Chr13:60070511-60074564 (+)
PWK/PhJ	ENSLUMG00010023644	lncRNA gene	Chr13:55298455-55302479 (+)
SPRET/EiJ	ENSMSPG00010042270	lncRNA gene	Chr13:55688632-55692643 (+)
WSB/EiJ	ENSIUOG00005027731	lncRNA gene	Chr13:55493734-55496648 (+)

Homology

• Gene Tree
  4930455M05Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000114787 (Evidence)
• NCBI Gene
  78918

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114787	Ensembl Gene Model | MGI Sequence Detail	4054	C57BL/6J
transcript	ENSMUST00000225030	Ensembl | MGI Sequence Detail	3513	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4930455M05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120093	Chr13:59567175-59567211 (+)	271 bp
Tssr120094	Chr13:59567398-59567404 (+)	479 bp