4930425K24Rik Gene Detail

Summary

• Symbol
  4930425K24Rik
• Name
  RIKEN cDNA 4930425K24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926166
  NCBI Gene: 78916
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:110202926-110205068 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, cytoband F2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926166	lncRNA gene	Chr12:110202926-110205068 (+)
129S1/SvImJ	ENSMUSG00200026707	unclassified gene	Chr12:101977417-101979559 (+)
A/J	ENSMUSG00195045218	unclassified gene	Chr12:104496271-104498406 (+)
AKR/J	ENSMUSG00220042366	unclassified gene	Chr12:102391497-102393640 (+)
BALB/cJ	ENSMUSG00180049218	unclassified gene	Chr12:103740484-103742627 (+)
C3H/HeJ	ENSMUSG00175049742	unclassified gene	Chr12:106308716-106310856 (+)
C57BL/6NJ	ENSMUSG00215050601	unclassified gene	Chr12:103013358-103015500 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005019956	unclassified gene	Chr12:102489060-102491197 (+)
CBA/J	ENSMUSG00210034191	unclassified gene	Chr12:103370154-103372294 (+)
DBA/2J	ENSMUSG00185030604	unclassified gene	Chr12:105204047-105206185 (+)
FVB/NJ	ENSMUSG00205043777	unclassified gene	Chr12:102425301-102427443 (+)
JF1/MsJ	ENSUMUG00000027348	unclassified gene	Chr12:109956423-109958563 (+)
LP/J	ENSMUSG00230030821	unclassified gene	Chr12:112242108-112244250 (+)
NOD/ShiLtJ	ENSMUSG00190031880	unclassified gene	Chr12:82804625-82806762 (-)
NZO/HlLtJ	ENSMUSG00225038411	unclassified gene	Chr12:113990266-113992409 (+)
PWK/PhJ	ENSLUMG00010050443	unclassified gene	Chr12:103419762-103421893 (+)
SPRET/EiJ	ENSMSPG00010023465	unclassified gene	Chr12:105711235-105713362 (+)
WSB/EiJ	ENSIUOG00005010338	unclassified gene	Chr12:102411823-102413963 (+)

Homology

• Gene Tree
  4930425K24Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000113605 (Evidence)
• NCBI Gene
  78916

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113605	Ensembl Gene Model | MGI Sequence Detail	2143	C57BL/6J
transcript	AK019584	GenBank | ENA | DDBJ | MGI Sequence Detail	2144	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573