9630013K17Rik Gene Detail

Summary

• Symbol
  9630013K17Rik
• Name
  RIKEN cDNA 9630013K17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926133
  NCBI Gene: 78883
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:63855052-63858866 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 39.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926133	lncRNA gene	Chr11:63855052-63858866 (+)
129S1/SvImJ	ENSMUSG00200037431	lncRNA gene	Chr11:60784965-60788779 (+)
A/J	ENSMUSG00195042355	lncRNA gene	Chr11:60817229-60821043 (+)
AKR/J	ENSMUSG00220050559	lncRNA gene	Chr11:60943942-60947756 (+)
BALB/cJ	ENSMUSG00180050908	lncRNA gene	Chr11:60865897-60869707 (+)
C3H/HeJ	ENSMUSG00175049341	lncRNA gene	Chr11:60833790-60837604 (+)
C57BL/6NJ	ENSMUSG00215040037	lncRNA gene	Chr11:60619430-60623244 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002637	antisense lncRNA gene	Chr11:58765442-58769371 (+)
CAST/EiJ	ENSTCUG00005047140	lncRNA gene	Chr11:60392642-60396454 (+)
CBA/J	ENSMUSG00210040411	lncRNA gene	Chr11:60675327-60679136 (+)
DBA/2J	ENSMUSG00185045609	lncRNA gene	Chr11:60867350-60871164 (+)
FVB/NJ	ENSMUSG00205051896	lncRNA gene	Chr11:60758358-60762171 (+)
JF1/MsJ	ENSUMUG00000057025	lncRNA gene	Chr11:61272807-61276620 (+)
LP/J	ENSMUSG00230054059	lncRNA gene	Chr11:62006069-62009883 (+)
NOD/ShiLtJ	ENSMUSG00190052142	lncRNA gene	Chr11:60871131-60874944 (+)
NZO/HlLtJ	ENSMUSG00225048071	lncRNA gene	Chr11:64173800-64177614 (+)
PWK/PhJ	ENSLUMG00010037935	lncRNA gene	Chr11:60788121-60791934 (+)
SPRET/EiJ	ENSMSPG00010043178	lncRNA gene	Chr11:61473174-61476987 (+)
WSB/EiJ	ENSIUOG00005039493	lncRNA gene	Chr11:60776820-60780633 (+)

Homology

• Gene Tree
  9630013K17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9630013K17Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086359 (Evidence)
• NCBI Gene
  78883

Representative Sequences			Length	Strain/Species
genomic	78883	NCBI Gene Model | MGI Sequence Detail	3815	C57BL/6J
transcript	NR_131111	RefSeq | MGI Sequence Detail	1072	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9630013K17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102108	Chr11:63854716-63854721 (+)	-333 bp
Tssr102109	Chr11:63856897-63856906 (+)	1,850 bp