E130215H24Rik Gene Detail

Summary

• Symbol
  E130215H24Rik
• Name
  RIKEN cDNA E130215H24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926091
  NCBI Gene: 109344
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:150509414-150510852 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 74.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926091	lncRNA gene	Chr2:150509340-150511007 (+)
129S1/SvImJ	ENSMUSG00200031509	lncRNA gene	Chr2:147621412-147622853 (+)
A/J	ENSMUSG00195022204	lncRNA gene	Chr2:147744352-147745793 (+)
AKR/J	ENSMUSG00220046660	lncRNA gene	Chr2:147101096-147102537 (+)
BALB/cJ	ENSMUSG00180044624	lncRNA gene	Chr2:147405578-147407019 (+)
C3H/HeJ	ENSMUSG00175046214	lncRNA gene	Chr2:147952595-147954036 (+)
C57BL/6NJ	ENSMUSG00215033289	lncRNA gene	Chr2:147477295-147478736 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013609	unclassified non-coding RNA gene	Chr2:142740830-142742277 (+)
CAST/EiJ	ENSTCUG00005044460	lncRNA gene	Chr2:146539449-146540887 (+)
CBA/J	ENSMUSG00210044557	lncRNA gene	Chr2:147871677-147873118 (+)
DBA/2J	ENSMUSG00185048212	lncRNA gene	Chr2:147511814-147513255 (+)
FVB/NJ	ENSMUSG00205041186	lncRNA gene	Chr2:146660435-146661876 (+)
JF1/MsJ	ENSUMUG00000048021	lncRNA gene	Chr2:147328247-147329685 (+)
LP/J	ENSMUSG00230036361	lncRNA gene	Chr2:149203819-149205260 (+)
NOD/ShiLtJ	ENSMUSG00190041462	lncRNA gene	Chr2:147616617-147618055 (+)
NZO/HlLtJ	ENSMUSG00225005469	lncRNA gene	Chr2:157199957-157201398 (+)
PWK/PhJ	ENSLUMG00010046073	lncRNA gene	Chr2:147319481-147320920 (+)
SPRET/EiJ	ENSMSPG00010029079	lncRNA gene	Chr2:150042683-150044118 (+)
WSB/EiJ	ENSIUOG00005048896	lncRNA gene	Chr2:147247671-147249112 (+)

Homology

• Gene Tree
  E130215H24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving E130215H24Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000087406 (Evidence)
• NCBI Gene
  109344

Representative Sequences			Length	Strain/Species
genomic	109344	NCBI Gene Model | MGI Sequence Detail	1439	C57BL/6J
transcript	NR_040331	RefSeq | MGI Sequence Detail	936	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for E130215H24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20706	Chr2:150509305-150509341 (+)	-91 bp