4930544L04Rik Gene Detail

Summary

• Symbol
  4930544L04Rik
• Name
  RIKEN cDNA 4930544L04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1926057
  NCBI Gene: 78807
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:134998064-135001273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 81.27 cM, cytoband F5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  219 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926057	lncRNA gene	Chr7:134998064-135001273 (+)
129S1/SvImJ	ENSMUSG00200024627	protein coding gene	Chr7:121550757-121554045 (+)
129S1/SvImJ	ENSMUSG00200026956	unclassified gene	Chr7:121550828-121554037 (+)
A/J	ENSMUSG00195033013	protein coding gene	Chr7:126021411-126024699 (+)
A/J	ENSMUSG00195040388	unclassified gene	Chr7:126021482-126024691 (+)
AKR/J	ENSMUSG00220016555	unclassified gene	Chr7:119489758-119492967 (+)
AKR/J	ENSMUSG00220015979	protein coding gene	Chr7:119489687-119492975 (+)
BALB/cJ	ENSMUSG00180039929	protein coding gene	Chr7:122727570-122730858 (+)
BALB/cJ	ENSMUSG00180040688	unclassified gene	Chr7:122727641-122730850 (+)
C3H/HeJ	ENSMUSG00175044921	unclassified gene	Chr7:123453810-123457019 (+)
C3H/HeJ	ENSMUSG00175033156	protein coding gene	Chr7:123453739-123457027 (+)
C57BL/6NJ	ENSMUSG00215043512	protein coding gene	Chr7:122716251-122719539 (+)
C57BL/6NJ	ENSMUSG00215047200	unclassified gene	Chr7:122716322-122719531 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030599	protein coding gene	Chr7:137566890-137570074 (+)
CAST/EiJ	ENSTCUG00005051830	unclassified gene	Chr7:126035982-126039191 (+)
CBA/J	ENSMUSG00210026241	protein coding gene	Chr7:123225113-123228401 (+)
CBA/J	ENSMUSG00210032618	unclassified gene	Chr7:123225184-123228393 (+)
DBA/2J	ENSMUSG00185023486	protein coding gene	Chr7:127518172-127521460 (+)
DBA/2J	ENSMUSG00185024982	unclassified gene	Chr7:127518243-127521452 (+)
FVB/NJ	ENSMUSG00205047494	unclassified gene	Chr7:123186710-123189919 (+)
FVB/NJ	ENSMUSG00205036716	protein coding gene	Chr7:123186639-123189927 (+)
JF1/MsJ	ENSUMUG00000047610	unclassified gene	Chr7:132577538-132580724 (+)
LP/J	ENSMUSG00230042360	protein coding gene	Chr7:133654406-133657694 (+)
LP/J	ENSMUSG00230043386	unclassified gene	Chr7:133654477-133657686 (+)
NOD/ShiLtJ	ENSMUSG00190020717	protein coding gene	Chr7:123330177-123333465 (+)
NOD/ShiLtJ	ENSMUSG00190029708	unclassified gene	Chr7:123330248-123333457 (+)
NZO/HlLtJ	ENSMUSG00225051426	protein coding gene	Chr7:131893977-131897265 (+)
NZO/HlLtJ	ENSMUSG00225053238	unclassified gene	Chr7:131894048-131897257 (+)
PWK/PhJ	ENSLUMG00010043371	unclassified gene	Chr7:121731812-121735013 (+)
SPRET/EiJ	ENSMSPG00010043678	unclassified gene	Chr7:123054578-123057781 (+)
WSB/EiJ	ENSIUOG00005035929	unclassified gene	Chr7:124020547-124023759 (+)

Homology

• Gene Tree
  4930544L04Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• UniProt
  1

• Ensembl
  ENSMUSG00000073803 (Evidence)
• NCBI Gene
  78807

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073803	Ensembl Gene Model | MGI Sequence Detail	3210	C57BL/6J
transcript	AK133210	GenBank | ENA | DDBJ | MGI Sequence Detail	3205	C57BL/6J
polypeptide	Q3V0D6	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 4930544L04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69627	Chr7:134998059-134998091 (+)	11 bp