9130017K11Rik Gene Detail

Summary

• Symbol
  9130017K11Rik
• Name
  RIKEN cDNA 9130017K11 gene
• Synonyms
  2810451K12Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1926030
  NCBI Gene: 72804
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:67812330-67838485 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 41.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1926030	lncRNA gene	Chr11:67812330-67838485 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015180	unclassified non-coding RNA gene	Chr11:68239503-68268596 (+)
A/J	MGP_AJ_G0015154	unclassified non-coding RNA gene	Chr11:65690331-65716991 (+)
AKR/J	MGP_AKRJ_G0015117	unclassified non-coding RNA gene	Chr11:67649058-67678045 (+)
BALB/cJ	MGP_BALBcJ_G0015116	unclassified non-coding RNA gene	Chr11:65973053-65999536 (+)
C3H/HeJ	MGP_C3HHeJ_G0014940	unclassified non-coding RNA gene	Chr11:67670171-67697156 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015573	unclassified non-coding RNA gene	Chr11:70325483-70353376 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013316	unclassified non-coding RNA gene	Chr11:62640932-62667598 (+)
CAST/EiJ	MGP_CASTEiJ_G0014493	unclassified non-coding RNA gene	Chr11:67884880-67915939 (+)
CBA/J	MGP_CBAJ_G0014919	unclassified non-coding RNA gene	Chr11:73439956-73473592 (+)
DBA/2J	MGP_DBA2J_G0015012	unclassified non-coding RNA gene	Chr11:65294912-65322012 (+)
FVB/NJ	MGP_FVBNJ_G0015024	unclassified non-coding RNA gene	Chr11:64903587-64934682 (+)
LP/J	MGP_LPJ_G0015093	unclassified non-coding RNA gene	Chr11:68814554-68842606 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015050	unclassified non-coding RNA gene	Chr11:74176025-74203223 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015612	unclassified non-coding RNA gene	Chr11:67900907-67928751 (+)
PWK/PhJ	MGP_PWKPhJ_G0014285	unclassified non-coding RNA gene	Chr11:65907812-65935175 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014072	unclassified non-coding RNA gene	Chr11:67729852-67756428 (+)
WSB/EiJ	MGP_WSBEiJ_G0014596	unclassified non-coding RNA gene	Chr11:67509145-67537805 (+)

Homology

• Gene Tree
  9130017K11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9130017K11Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• UniProt
  1

• Ensembl
  ENSMUSG00000055134 (Evidence)
• NCBI Gene
  72804

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055134	Ensembl Gene Model | MGI Sequence Detail	26156	C57BL/6J
transcript	ENSMUST00000135670	Ensembl | MGI Sequence Detail	3338	Not Applicable
polypeptide	Q8BT71	UniProt | EBI | MGI Sequence Detail	90	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:1920054

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9130017K11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102287	Chr11:67813196-67813213 (+)	875 bp