D730003I15Rik Gene Detail

Summary

• Symbol
  D730003I15Rik
• Name
  RIKEN cDNA D730003I15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925971
  NCBI Gene: 100504360
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:190956651-190957884 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 96.28 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925971	lncRNA gene	Chr1:190956601-191025888 (+)
129S1/SvImJ	ENSMUSG00200004406	lncRNA gene	Chr1:188734834-188736570 (+)
A/J	ENSMUSG00195009116	lncRNA gene	Chr1:188314450-188316186 (+)
AKR/J	ENSMUSG00220005164	lncRNA gene	Chr1:187558299-187560035 (+)
BALB/cJ	ENSMUSG00180020370	lncRNA gene	Chr1:188379900-188381637 (+)
C3H/HeJ	ENSMUSG00175022799	lncRNA gene	Chr1:188567884-188569620 (+)
C57BL/6NJ	ENSMUSG00215023651	lncRNA gene	Chr1:187789392-187791128 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004606	lincRNA gene	Chr1:181023738-181025437 (+)
CAST/EiJ	ENSTCUG00005002212	lncRNA gene	Chr1:186357537-186359273 (+)
CBA/J	ENSMUSG00210003742	lncRNA gene	Chr1:188229908-188231644 (+)
DBA/2J	ENSMUSG00185010692	lncRNA gene	Chr1:192843171-192844907 (+)
FVB/NJ	ENSMUSG00205004799	lncRNA gene	Chr1:187225939-187227675 (+)
JF1/MsJ	ENSUMUG00000006374	lncRNA gene	Chr1:191835661-191837397 (+)
LP/J	ENSMUSG00230025703	lncRNA gene	Chr1:192378785-192380521 (+)
NOD/ShiLtJ	ENSMUSG00190035932	lncRNA gene	Chr1:188213419-188215155 (+)
NZO/HlLtJ	ENSMUSG00225017013	lncRNA gene	Chr1:196140089-196141825 (+)
PWK/PhJ	ENSLUMG00010007011	lncRNA gene	Chr1:187062143-187063879 (+)
SPRET/EiJ	ENSMSPG00010025722	lncRNA gene	Chr1:190605863-190607605 (+)
WSB/EiJ	ENSIUOG00005004807	lncRNA gene	Chr1:187563585-187565321 (+)

Homology

• Gene Tree
  D730003I15Rik
  

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000073478 (Evidence)
• NCBI Gene
  100504360

Representative Sequences			Length	Strain/Species
genomic	100504360	NCBI Gene Model | MGI Sequence Detail	1234	C57BL/6J
transcript	NR_151547	RefSeq | MGI Sequence Detail	593	C57BL/6
polypeptide	Q3TZC1	UniProt | EBI | MGI Sequence Detail	69	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2138509

References

• Summaries
  All 15
• Earliest
  J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for D730003I15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10744	Chr1:190956640-190956658 (+)	-2 bp
Tssr10745	Chr1:190956659-190956718 (+)	38 bp
Tssr10746	Chr1:190957243-190957259 (+)	600 bp
Tssr10747	Chr1:190957637-190957664 (+)	1,000 bp