D530017H19Rik Gene Detail

Summary

• Symbol
  D530017H19Rik
• Name
  RIKEN cDNA D530017H19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925963
  NCBI Gene: 78713
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:6087872-6097459 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  365 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925963	lncRNA gene	Chr19:6087872-6097459 (-)
129S1/SvImJ	ENSMUSG00200053363	lncRNA gene	Chr19:2858245-2859473 (-)
A/J	ENSMUSG00195053155	lncRNA gene	Chr19:3257802-3259031 (-)
AKR/J	ENSMUSG00220050297	lncRNA gene	Chr19:3030938-3032167 (-)
BALB/cJ	ENSMUSG00180051941	lncRNA gene	Chr19:3632526-3633756 (-)
C3H/HeJ	ENSMUSG00175014110	lncRNA gene	Chr19:2882697-2883926 (-)
C57BL/6NJ	ENSMUSG00215048470	lncRNA gene	Chr19:3096574-3097802 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005043236	lncRNA gene	Chr19:3016826-3018055 (-)
CBA/J	ENSMUSG00210050240	lncRNA gene	Chr19:2885418-2886646 (-)
DBA/2J	ENSMUSG00185053957	lncRNA gene	Chr19:3261904-3263132 (-)
FVB/NJ	ENSMUSG00205053404	lncRNA gene	Chr19:3264094-3265324 (-)
JF1/MsJ	ENSUMUG00000056926	lncRNA gene	Chr19:3230677-3231903 (-)
LP/J	ENSMUSG00230054287	lncRNA gene	Chr19:4165127-4166355 (-)
NOD/ShiLtJ	ENSMUSG00190051971	lncRNA gene	Chr19:2792287-2793516 (-)
NZO/HlLtJ	ENSMUSG00225026796	lncRNA gene	Chr19:7873939-7875167 (-)
PWK/PhJ	ENSLUMG00010008134	lncRNA gene	Chr19:2998409-2999636 (-)
SPRET/EiJ	ENSMSPG00010051625	lncRNA gene	Chr19:2992891-2994115 (-)
WSB/EiJ	ENSIUOG00005050965	lncRNA gene	Chr19:2905653-2906883 (-)

Homology

• Gene Tree
  D530017H19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000119968 (Evidence)
• NCBI Gene
  78713

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119968	Ensembl Gene Model | MGI Sequence Detail	9588	C57BL/6J
transcript	ENSMUST00000240873	Ensembl | MGI Sequence Detail	2213	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for D530017H19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr157818	Chr19:6097440-6097454 (-)	12 bp
Tssr157817	Chr19:6096978-6097061 (-)	439 bp