C030005K06Rik Gene Detail

Summary

• Symbol
  C030005K06Rik
• Name
  RIKEN cDNA C030005K06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925945
  NCBI Gene: 102635912
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:50175797-50186911 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 27.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  436 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925945	lncRNA gene	Chr18:50174680-50186911 (-)
129S1/SvImJ	ENSMUSG00200030647	lncRNA gene	Chr18:47216185-47227256 (-)
A/J	ENSMUSG00195025549	lncRNA gene	Chr18:47366208-47377281 (-)
AKR/J	ENSMUSG00220021560	lncRNA gene	Chr18:47312383-47323457 (-)
BALB/cJ	ENSMUSG00180007812	lncRNA gene	Chr18:47897858-47908915 (-)
C3H/HeJ	ENSMUSG00175011206	lncRNA gene	Chr18:47496466-47507525 (-)
C57BL/6NJ	ENSMUSG00215009969	lncRNA gene	Chr18:46906046-46917161 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013498	unclassified non-coding RNA gene	Chr18:46906781-46917864 (-)
CAST/EiJ	ENSTCUG00005013948	lncRNA gene	Chr18:46784077-46795179 (-)
CBA/J	ENSMUSG00210022536	lncRNA gene	Chr18:47455487-47466544 (-)
DBA/2J	ENSMUSG00185028650	lncRNA gene	Chr18:47356462-47367519 (-)
FVB/NJ	ENSMUSG00205015645	lncRNA gene	Chr18:46832610-46843667 (-)
JF1/MsJ	ENSUMUG00000028696	lncRNA gene	Chr18:47334540-47345619 (-)
LP/J	ENSMUSG00230029308	lncRNA gene	Chr18:49392800-49403871 (-)
NOD/ShiLtJ	ENSMUSG00190030012	lncRNA gene	Chr18:47140313-47151370 (-)
NZO/HlLtJ	ENSMUSG00225027636	lncRNA gene	Chr18:49295532-49306603 (-)
PWK/PhJ	ENSLUMG00010021667	lncRNA gene	Chr18:47449871-47460955 (-)
SPRET/EiJ	ENSMSPG00010013367	lncRNA gene	Chr18:47769917-47781085 (-)
WSB/EiJ	ENSIUOG00005009664	lncRNA gene	Chr18:47049401-47060476 (-)

Homology

• Gene Tree
  C030005K06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving C030005K06Rik
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000086600 (Evidence)
• NCBI Gene
  102635912

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086600	Ensembl Gene Model | MGI Sequence Detail	11115	C57BL/6J
transcript	ENSMUST00000129164	Ensembl | MGI Sequence Detail	2076	Not Applicable

Molecular
Reagents

• All nucleic 7

  cDNA 7

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for C030005K06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153298	Chr18:50186715-50186729 (-)	189 bp