1700080C20Rik Gene Detail

Summary

• Symbol
  1700080C20Rik
• Name
  RIKEN cDNA 1700080C20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925882
  NCBI Gene: 78632
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:25979116-25979496 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925882	lncRNA gene	Chr17:25979116-25979496 (+)
129S1/SvImJ	ENSMUSG00200054026	lncRNA gene	Chr17:21424128-21424448 (+)
A/J	ENSMUSG00195054368	lncRNA gene	Chr17:22441338-22441658 (+)
AKR/J	ENSMUSG00220053410	lncRNA gene	Chr17:21488080-21488400 (+)
BALB/cJ	ENSMUSG00180051557	lncRNA gene	Chr17:21722133-21722453 (+)
C3H/HeJ	ENSMUSG00175054123	lncRNA gene	Chr17:21480399-21480719 (+)
C57BL/6NJ	ENSMUSG00215054635	lncRNA gene	Chr17:21488754-21489074 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050968	lncRNA gene	Chr17:22070277-22070596 (+)
CBA/J	ENSMUSG00210050873	lncRNA gene	Chr17:21319242-21319562 (+)
DBA/2J	ENSMUSG00185053319	lncRNA gene	Chr17:23529599-23529919 (+)
FVB/NJ	ENSMUSG00205052884	lncRNA gene	Chr17:21785017-21785337 (+)
JF1/MsJ	ENSUMUG00000058060	lncRNA gene	Chr17:22985194-22985524 (+)
LP/J	ENSMUSG00230055070	lncRNA gene	Chr17:24928671-24928991 (+)
NOD/ShiLtJ	ENSMUSG00190054429	lncRNA gene	Chr17:21418320-21418640 (+)
NZO/HlLtJ	ENSMUSG00225054377	lncRNA gene	Chr17:26848683-26849003 (+)
PWK/PhJ	ENSLUMG00010053295	lncRNA gene	Chr17:20904048-20904368 (+)
SPRET/EiJ	ENSMSPG00010050628	lncRNA gene	Chr17:22223183-22223501 (+)
WSB/EiJ	ENSIUOG00005052206	lncRNA gene	Chr17:22161849-22162170 (+)

Homology

• Gene Tree
  1700080C20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving 1700080C20Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000117741 (Evidence)
• NCBI Gene
  78632

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117741	Ensembl Gene Model | MGI Sequence Detail	381	C57BL/6J
transcript	ENSMUST00000236363	Ensembl | MGI Sequence Detail	246	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044