Acsbg3 Gene Detail

Summary

• Symbol
  Acsbg3
• Name
  acyl-CoA synthetase bubblegum family member 3
• Synonyms
  1700061G19Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1925875
  NCBI Gene: 78625
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr17:57182477-57195904 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 29.55 cM, cytoband E1.1
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  410 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925875	protein coding gene	Chr17:57182453-57195907 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023942	protein coding gene	Chr17:58613405-58626561 (+)
A/J	MGP_AJ_G0023900	protein coding gene	Chr17:56993716-57007098 (+)
AKR/J	MGP_AKRJ_G0023869	protein coding gene	Chr17:57713213-57727982 (+)
BALB/cJ	MGP_BALBcJ_G0023901	protein coding gene	Chr17:56836312-56849685 (+)
C3H/HeJ	MGP_C3HHeJ_G0023665	protein coding gene	Chr17:58432534-58448012 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024347	protein coding gene	Chr17:60867792-60885244 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021793	protein coding gene	Chr17:53466835-53480457 (+)
CAST/EiJ	MGP_CASTEiJ_G0023147	protein coding gene	Chr17:58713734-58730111 (+)
CBA/J	MGP_CBAJ_G0023641	protein coding gene	Chr17:63254670-63274040 (+)
DBA/2J	MGP_DBA2J_G0023769	protein coding gene	Chr17:55691586-55704953 (+)
FVB/NJ	MGP_FVBNJ_G0023735	protein coding gene	Chr17:55259668-55274039 (+)
LP/J	MGP_LPJ_G0023851	protein coding gene	Chr17:59291895-59306290 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023763	protein coding gene	Chr17:62725105-62739163 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024391	protein coding gene	Chr17:58073714-58089094 (+)
PWK/PhJ	MGP_PWKPhJ_G0022893	protein coding gene	Chr17:55056811-55071019 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022704	protein coding gene	Chr17:54837694-54851330 (+)
WSB/EiJ	MGP_WSBEiJ_G0023213	protein coding gene	Chr17:58686396-58703076 (+)

Homology

• MGI Vertebrate Homology
  Acsbg3 stringent orthology
  1 mouse;1 rat;1 zebrafish
  
• Gene Tree
  Acsbg3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  27
• Gene trapped
  27
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  107 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  6
• UniProt
  3
• CCDS
  CCDS37666.1

• Ensembl
  ENSMUSG00000024209 (Evidence)
• NCBI Gene
  78625

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000024209	Ensembl Gene Model | MGI Sequence Detail	13428	C57BL/6J
transcript	ENSMUST00000025048	Ensembl | MGI Sequence Detail	2677	Not Applicable
polypeptide	ENSMUSP00000025048	Ensembl | MGI Sequence Detail	705	Not Applicable

Protein
Information

• UniProt
  3 Sequences
• EC
  6.2.1.3
• InterPro Domains
  IPR000873 AMP-dependent synthetase/ligase domain
  IPR042099 ANL, N-terminal domain

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:2146887, MGI:6330758

References

• Summaries
  All 25

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Acsbg3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr145348	Chr17:57182471-57182489 (+)	3 bp
Tssr145349	Chr17:57182498-57182507 (+)	26 bp
Tssr145350	Chr17:57182509-57182518 (+)	37 bp
Tssr145351	Chr17:57182523-57182535 (+)	52 bp
Tssr145352	Chr17:57184127-57184140 (+)	1,657 bp
Tssr145353	Chr17:57185637-57185640 (+)	3,162 bp
Tssr145354	Chr17:57190973-57191019 (+)	8,519 bp