A930014E01Rik Gene Detail

Summary

• Symbol
  A930014E01Rik
• Name
  RIKEN cDNA A930014E01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925848
  NCBI Gene: 78598
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:10369851-10370180 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925848	lncRNA gene	Chr3:10369851-10370180 (+)
129S1/SvImJ	ENSMUSG00200000817	unclassified gene	Chr3:7047250-7047579 (+)
A/J	ENSMUSG00195001199	unclassified gene	Chr3:7388216-7388545 (+)
AKR/J	ENSMUSG00220017069	unclassified gene	Chr3:7393047-7393376 (+)
BALB/cJ	ENSMUSG00180007455	unclassified gene	Chr3:7410276-7410605 (+)
C3H/HeJ	ENSMUSG00175005169	unclassified gene	Chr3:7396576-7396905 (+)
C57BL/6NJ	ENSMUSG00215005612	unclassified gene	Chr3:7403437-7403766 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000869	unclassified gene	Chr3:6315067-6315396 (+)
CAST/EiJ	ENSTCUG00005000223	unclassified gene	Chr3:7453360-7453689 (+)
CBA/J	ENSMUSG00210000977	unclassified gene	Chr3:7381725-7382054 (+)
DBA/2J	ENSMUSG00185000504	unclassified gene	Chr3:7380911-7381240 (+)
FVB/NJ	ENSMUSG00205006056	unclassified gene	Chr3:7196418-7196747 (+)
JF1/MsJ	ENSUMUG00000011167	unclassified gene	Chr3:7254744-7255073 (+)
LP/J	ENSMUSG00230000222	unclassified gene	Chr3:9299195-9299524 (+)
NOD/ShiLtJ	ENSMUSG00190023860	unclassified gene	Chr3:7478981-7479310 (+)
NZO/HlLtJ	ENSMUSG00225000946	unclassified gene	Chr3:11871803-11872132 (+)
PWK/PhJ	ENSLUMG00010008308	unclassified gene	Chr3:7339110-7339439 (+)
SPRET/EiJ	ENSMSPG00010000132	unclassified gene	Chr3:7203080-7203419 (+)
WSB/EiJ	ENSIUOG00005000827	unclassified gene	Chr3:7392162-7392491 (+)

Homology

• Gene Tree
  A930014E01Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000104092 (Evidence)
• NCBI Gene
  78598

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104092	Ensembl Gene Model | MGI Sequence Detail	330	C57BL/6J
transcript	AK020856	GenBank | ENA | DDBJ | MGI Sequence Detail	332	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573