9630015K15Rik Gene Detail

Summary

• Symbol
  9630015K15Rik
• Name
  RIKEN cDNA 9630015K15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925819
  NCBI Gene: 78569
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:64353763-64365054 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, cytoband C3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  337 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925819	lncRNA gene	Chr14:64353739-64365080 (+)
129S1/SvImJ	ENSMUSG00200030477	lncRNA gene	Chr14:52980583-52991720 (+)
A/J	ENSMUSG00195014929	lncRNA gene	Chr14:53152601-53163746 (+)
AKR/J	ENSMUSG00220032656	lncRNA gene	Chr14:52493116-52504256 (+)
BALB/cJ	ENSMUSG00180037404	lncRNA gene	Chr14:52768725-52779868 (+)
C3H/HeJ	ENSMUSG00175039378	lncRNA gene	Chr14:54516956-54528093 (+)
C57BL/6NJ	ENSMUSG00215027048	lncRNA gene	Chr14:52686405-52697696 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039356	lncRNA gene	Chr14:54412062-54423230 (+)
CBA/J	ENSMUSG00210039801	lncRNA gene	Chr14:53140065-53151211 (+)
DBA/2J	ENSMUSG00185033259	lncRNA gene	Chr14:58314792-58325929 (+)
FVB/NJ	ENSMUSG00205040018	lncRNA gene	Chr14:52655440-52666583 (+)
JF1/MsJ	ENSUMUG00000047817	lncRNA gene	Chr14:69477839-69489545 (+)
LP/J	ENSMUSG00230037856	lncRNA gene	Chr14:70344178-70355315 (+)
NOD/ShiLtJ	ENSMUSG00190043999	lncRNA gene	Chr14:52934799-52945942 (+)
NZO/HlLtJ	ENSMUSG00225046782	lncRNA gene	Chr14:60667783-60678926 (+)
PWK/PhJ	ENSLUMG00010039986	lncRNA gene	Chr14:52365576-52377242 (+)
SPRET/EiJ	ENSMSPG00010033486	lncRNA gene	Chr14:55844503-55854909 (+)
WSB/EiJ	ENSIUOG00005039885	lncRNA gene	Chr14:52371916-52383071 (+)

Homology

• Gene Tree
  9630015K15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 9630015K15Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000114284 (Evidence)
• NCBI Gene
  78569

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114284	Ensembl Gene Model | MGI Sequence Detail	11292	C57BL/6J
transcript	ENSMUST00000225122	Ensembl | MGI Sequence Detail	572	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573