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3300005D01Rik Gene Detail
Summary
  • Symbol
    3300005D01Rik
  • Name
    RIKEN cDNA 3300005D01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925762
    NCBI Gene: 78512
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:5848932-5853517 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 3.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    267 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925762
 lncRNA gene Chr17:5848816-5853526 (+)
129S1/SvImJ ENSMUSG00200035184
 lncRNA gene Chr17:2739466-2744071 (+)
A/J ENSMUSG00195023743
 lncRNA gene Chr17:2738666-2743249 (+)
AKR/J ENSMUSG00220028119
 lncRNA gene Chr17:2936451-2940999 (+)
BALB/cJ ENSMUSG00180028824
 lncRNA gene Chr17:2750441-2755024 (+)
C3H/HeJ ENSMUSG00175035220
 lncRNA gene Chr17:2710448-2715031 (+)
C57BL/6NJ ENSMUSG00215032531
 lncRNA gene Chr17:2731293-2735877 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005167
 lincRNA gene Chr17:2689776-2694494 (+)
CAST/EiJ ENSTCUG00005023141
 lncRNA gene Chr17:2775612-2780186 (+)
CBA/J ENSMUSG00210041411
 lncRNA gene Chr17:2727387-2731965 (+)
DBA/2J ENSMUSG00185023587
 lncRNA gene Chr17:2830617-2835200 (+)
FVB/NJ ENSMUSG00205009778
 lncRNA gene Chr17:2788338-2792923 (+)
JF1/MsJ ENSUMUG00000038578
 lncRNA gene Chr17:2805865-2810188 (+)
LP/J ENSMUSG00230034799
 lncRNA gene Chr17:3927782-3932366 (+)
NOD/ShiLtJ ENSMUSG00190039450
 lncRNA gene Chr17:2718469-2723017 (+)
NZO/HlLtJ ENSMUSG00225029082
 lncRNA gene Chr17:6231786-6236369 (+)
PWK/PhJ ENSLUMG00010020146
 lncRNA gene Chr17:2825282-2830294 (+)
SPRET/EiJ ENSMSPG00010039768
 lncRNA gene Chr17:2764233-2768796 (+)
WSB/EiJ ENSIUOG00005014281
 lncRNA gene Chr17:2780134-2784745 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    41
  • RefSeq
    3
Representative SequencesLengthStrain/SpeciesFlank
genomic 78512 NCBI Gene Model | MGI Sequence Detail 4586 C57BL/6J ±  kb
transcript NR_045079 RefSeq | MGI Sequence Detail 1177 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 6
    Genomic 2
    cDNA 4
References
more
  • Summaries
    All 12
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:223994 Zangrando J, et al., Identification of candidate long non-coding RNAs in response to myocardial infarction. BMC Genomics. 2014;15:460
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/01/2026
MGI 6.24 		The Jackson Laboratory