9530077C14Rik Gene Detail

Summary

• Symbol
  9530077C14Rik
• Name
  RIKEN cDNA 9530077C14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925704
  NCBI Gene: 78454
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:138919163-138920961 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925704	lncRNA gene	Chr4:138919163-138920961 (-)
129S1/SvImJ	ENSMUSG00200046267	lncRNA gene	Chr4:132333613-132334175 (-)
A/J	ENSMUSG00195035838	lncRNA gene	Chr4:133677070-133677632 (-)
AKR/J	ENSMUSG00220048572	lncRNA gene	Chr4:132670454-132671017 (-)
BALB/cJ	ENSMUSG00180049534	lncRNA gene	Chr4:131310160-131310723 (-)
C3H/HeJ	ENSMUSG00175049072	lncRNA gene	Chr4:132338690-132339253 (-)
C57BL/6NJ	ENSMUSG00215051088	lncRNA gene	Chr4:133862622-133863184 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013860	lncRNA gene	Chr4:133301179-133301741 (-)
CBA/J	ENSMUSG00210030567	lncRNA gene	Chr4:131962475-131963038 (-)
DBA/2J	ENSMUSG00185051409	lncRNA gene	Chr4:133475717-133476280 (-)
FVB/NJ	ENSMUSG00205049202	lncRNA gene	Chr4:131726212-131726775 (-)
JF1/MsJ	ENSUMUG00000046627	lncRNA gene	Chr4:134175242-134175804 (-)
LP/J	ENSMUSG00230040853	lncRNA gene	Chr4:137272186-137272748 (-)
NOD/ShiLtJ	ENSMUSG00190033307	lncRNA gene	Chr4:131736003-131736565 (-)
NZO/HlLtJ	ENSMUSG00225010477	lncRNA gene	Chr4:143226890-143227452 (-)
PWK/PhJ	ENSLUMG00010047784	lncRNA gene	Chr4:131163092-131163655 (-)
SPRET/EiJ	ENSMSPG00010037408	lncRNA gene	Chr4:133215790-133216352 (-)
WSB/EiJ	ENSIUOG00005044071	lncRNA gene	Chr4:131621336-131621899 (-)

Homology

• Gene Tree
  9530077C14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  1 involving 9530077C14Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000120262 (Evidence)
• NCBI Gene
  78454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120262	Ensembl Gene Model | MGI Sequence Detail	1799	C57BL/6J
transcript	ENSMUST00000242137	Ensembl | MGI Sequence Detail	1043	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for 9530077C14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44218	Chr4:138921307-138921311 (-)	-348 bp
Tssr44217	Chr4:138919975-138920029 (-)	959 bp
Tssr44216	Chr4:138919952-138919969 (-)	1,000 bp
Tssr44215	Chr4:138919925-138919948 (-)	1,024 bp
Tssr44214	Chr4:138919766-138919779 (-)	1,188 bp