A930033M14Rik Gene Detail

Summary

• Symbol
  A930033M14Rik
• Name
  RIKEN cDNA A930033M14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925691
  NCBI Gene: 78441
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:40136930-40137329 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925691	lncRNA gene	Chr10:40136930-40137329 (+)
129S1/SvImJ	ENSMUSG00200009454	lncRNA gene	Chr10:36991993-36992392 (+)
A/J	ENSMUSG00195018970	lncRNA gene	Chr10:37294838-37295237 (+)
AKR/J	ENSMUSG00220028702	lncRNA gene	Chr10:36971433-36971832 (+)
BALB/cJ	ENSMUSG00180017972	lncRNA gene	Chr10:37380049-37380448 (+)
C3H/HeJ	ENSMUSG00175012286	lncRNA gene	Chr10:37174336-37174735 (+)
C57BL/6NJ	ENSMUSG00215010682	lncRNA gene	Chr10:36924917-36925316 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028703	lncRNA gene	Chr10:37381048-37381447 (+)
CBA/J	ENSMUSG00210025774	lncRNA gene	Chr10:37067783-37068182 (+)
DBA/2J	ENSMUSG00185008305	lncRNA gene	Chr10:37220420-37220819 (+)
FVB/NJ	ENSMUSG00205013664	lncRNA gene	Chr10:37135021-37135420 (+)
JF1/MsJ	ENSUMUG00000034239	lncRNA gene	Chr10:37006213-37006611 (+)
LP/J	ENSMUSG00230016361	lncRNA gene	Chr10:38982077-38982476 (+)
NOD/ShiLtJ	ENSMUSG00190033676	lncRNA gene	Chr10:37348700-37349099 (+)
NZO/HlLtJ	ENSMUSG00225017948	lncRNA gene	Chr10:43307940-43308339 (+)
PWK/PhJ	ENSLUMG00010008244	lncRNA gene	Chr10:37121334-37121733 (+)
SPRET/EiJ	ENSMSPG00010021465	lncRNA gene	Chr10:38145756-38146155 (+)
WSB/EiJ	ENSIUOG00005015480	lncRNA gene	Chr10:36897296-36897695 (+)

Homology

• Gene Tree
  A930033M14Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000111665 (Evidence)
• NCBI Gene
  78441

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111665	Ensembl Gene Model | MGI Sequence Detail	400	C57BL/6J
transcript	ENSMUST00000217206	Ensembl | MGI Sequence Detail	400	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573