A930037H05Rik Gene Detail

Summary

• Symbol
  A930037H05Rik
• Name
  RIKEN cDNA A930037H05 gene
• Synonyms
  Gm44935

• Feature Type
  lncRNA gene
• IDs
  MGI:1925689
  NCBI Gene: 78439
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:119352026-119382061 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  840 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925689	lncRNA gene	Chr11:119339614-119382439 (-)
129S1/SvImJ	ENSMUSG00200052448	lncRNA gene	Chr11:116707433-116749946 (-)
A/J	ENSMUSG00195032465	lncRNA gene	Chr11:116382387-116424898 (-)
AKR/J	ENSMUSG00220034140	lncRNA gene	Chr11:116532778-116575292 (-)
BALB/cJ	ENSMUSG00180052823	lncRNA gene	Chr11:116674763-116717153 (-)
C3H/HeJ	ENSMUSG00175047787	lncRNA gene	Chr11:116632439-116674831 (-)
C57BL/6NJ	ENSMUSG00215046527	lncRNA gene	Chr11:116202966-116245479 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036391	lncRNA gene	Chr11:116063186-116105706 (-)
CBA/J	ENSMUSG00210050865	lncRNA gene	Chr11:116346520-116388916 (-)
DBA/2J	ENSMUSG00185027992	lncRNA gene	Chr11:116659639-116702029 (-)
FVB/NJ	ENSMUSG00205046037	lncRNA gene	Chr11:116507863-116550168 (-)
JF1/MsJ	ENSUMUG00000054710	lncRNA gene	Chr11:116952333-116995164 (-)
LP/J	ENSMUSG00230051095	lncRNA gene	Chr11:117725477-117767869 (-)
NOD/ShiLtJ	ENSMUSG00190049358	lncRNA gene	Chr11:116731380-116773891 (-)
NZO/HlLtJ	ENSMUSG00225053974	lncRNA gene	Chr11:119875027-119917538 (-)
PWK/PhJ	ENSLUMG00010024373	lncRNA gene	Chr11:116463257-116505515 (-)
SPRET/EiJ	ENSMSPG00010043778	lncRNA gene	Chr11:117052704-117095675 (-)
WSB/EiJ	ENSIUOG00005048916	lncRNA gene	Chr11:116465922-116508218 (-)

Homology

• Gene Tree
  A930037H05Rik
  

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000109408 (Evidence)
• NCBI Gene
  78439

Representative Sequences			Length	Strain/Species
genomic	78439	NCBI Gene Model | MGI Sequence Detail	30036	C57BL/6J
transcript	NR_153849	RefSeq | MGI Sequence Detail	2919	ZRU/MplStud

Molecular
Reagents

• All nucleic 7

  cDNA 7

Other
Accession IDs

MGI:5753511

References

• Summaries
  All 9
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for A930037H05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112229	Chr11:119382055-119382090 (-)	-12 bp