2900042G08Rik Gene Detail

Summary

• Symbol
  2900042G08Rik
• Name
  RIKEN cDNA 2900042G08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925651
  NCBI Gene: 78401
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:6580631-6581280 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925651	lncRNA gene	Chr13:6580631-6581280 (+)
129S1/SvImJ	ENSMUSG00200006269	unclassified gene	Chr13:3750614-3751263 (+)
A/J	ENSMUSG00195012622	unclassified gene	Chr13:3159471-3160120 (+)
AKR/J	ENSMUSG00220013252	unclassified gene	Chr13:3486777-3487426 (+)
BALB/cJ	ENSMUSG00180009792	unclassified gene	Chr13:3571152-3571801 (+)
C3H/HeJ	ENSMUSG00175009031	unclassified gene	Chr13:3604490-3605139 (+)
C57BL/6NJ	ENSMUSG00215024737	unclassified gene	Chr13:3824091-3824740 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025279	unclassified gene	Chr13:3839627-3840275 (+)
CBA/J	ENSMUSG00210023140	unclassified gene	Chr13:3142495-3143144 (+)
DBA/2J	ENSMUSG00185025937	unclassified gene	Chr13:3830622-3831271 (+)
FVB/NJ	ENSMUSG00205023021	unclassified gene	Chr13:3578786-3579435 (+)
JF1/MsJ	ENSUMUG00000008698	unclassified gene	Chr13:3893573-3894222 (+)
LP/J	ENSMUSG00230008085	unclassified gene	Chr13:13347969-13348618 (+)
NOD/ShiLtJ	ENSMUSG00190014439	unclassified gene	Chr13:3312085-3312734 (+)
NZO/HlLtJ	ENSMUSG00225034818	unclassified gene	Chr13:7253307-7253956 (+)
PWK/PhJ	ENSLUMG00010017258	unclassified gene	Chr13:3242412-3243061 (+)
SPRET/EiJ	ENSMSPG00010024064	unclassified gene	Chr13:3232847-3233496 (+)
WSB/EiJ	ENSIUOG00005021855	unclassified gene	Chr13:3175115-3175764 (+)

Homology

• Gene Tree
  2900042G08Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000114195 (Evidence)
• NCBI Gene
  78401

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114195	Ensembl Gene Model | MGI Sequence Detail	650	C57BL/6J
transcript	AK019333	GenBank | ENA | DDBJ | MGI Sequence Detail	650	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573