2610318M16Rik Gene Detail

Summary

• Symbol
  2610318M16Rik
• Name
  RIKEN cDNA 2610318M16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925643
  NCBI Gene: 102632156
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr14:14098554-14102333 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  236 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925643	lncRNA gene	Chr14:14097681-14128222 (-)
129S1/SvImJ	ENSMUSG00200015193	lncRNA gene	Chr14:10743090-10746670 (-)
A/J	ENSMUSG00195022097	lncRNA gene	Chr14:11606566-11610137 (-)
AKR/J	ENSMUSG00220029099	lncRNA gene	Chr14:10770530-10774100 (-)
BALB/cJ	ENSMUSG00180041100	lncRNA gene	Chr14:10897372-10900945 (-)
C3H/HeJ	ENSMUSG00175025003	lncRNA gene	Chr14:10965339-10968915 (-)
C57BL/6NJ	ENSMUSG00215036696	lncRNA gene	Chr14:11146436-11150007 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034133	lncRNA gene	Chr14:10783874-10787440 (-)
CBA/J	ENSMUSG00210026957	lncRNA gene	Chr14:11180391-11183966 (-)
DBA/2J	ENSMUSG00185038653	lncRNA gene	Chr14:11188857-11192432 (-)
FVB/NJ	ENSMUSG00205038430	lncRNA gene	Chr14:11100788-11104362 (-)
JF1/MsJ	ENSUMUG00000042557	lncRNA gene	Chr14:11122563-11126133 (-)
LP/J	ENSMUSG00230016008	lncRNA gene	Chr14:12241284-12244864 (-)
NOD/ShiLtJ	ENSMUSG00190041211	lncRNA gene	Chr14:11189017-11192592 (-)
NZO/HlLtJ	ENSMUSG00225036856	lncRNA gene	Chr14:11548643-11552206 (-)
PWK/PhJ	ENSLUMG00010039366	lncRNA gene	Chr14:32445817-32449396 (-)
SPRET/EiJ	ENSMSPG00010031831	lncRNA gene	Chr14:11572070-11575663 (-)
WSB/EiJ	ENSIUOG00005033399	lncRNA gene	Chr14:11027430-11031002 (-)

Homology

• Gene Tree
  2610318M16Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000114532 (Evidence)
• NCBI Gene
  102632156

Representative Sequences			Length	Strain/Species
genomic	102632156	NCBI Gene Model | MGI Sequence Detail	3780	C57BL/6J
transcript	NR_151471	RefSeq | MGI Sequence Detail	787	ZRU/MplStud
polypeptide	Q8BT56	UniProt | EBI | MGI Sequence Detail	79	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2610318M16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124245	Chr14:14102383-14102403 (-)	-60 bp
Tssr124246	Chr14:14102354-14102361 (-)	-25 bp
Tssr124247	Chr14:14101518-14101538 (-)	805 bp
Tssr124248	Chr14:14101508-14101517 (-)	820 bp
Tssr124249	Chr14:14101492-14101501 (-)	836 bp