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Platr27 Gene Detail
Summary
  • Symbol
    Platr27
  • Name
    pluripotency associated transcript 27
  • Synonyms
    2410019O14Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1925566
    NCBI Gene: 78316
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:157437499-157439240 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 78.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    171 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925566
 lncRNA gene Chr2:157437419-157439281 (-)
129S1/SvImJ ENSMUSG00200017309
 lncRNA gene Chr2:154300334-154302083 (-)
A/J ENSMUSG00195022507
 lncRNA gene Chr2:154673692-154675442 (-)
AKR/J ENSMUSG00220014080
 lncRNA gene Chr2:153979135-153980885 (-)
BALB/cJ ENSMUSG00180049176
 lncRNA gene Chr2:154121328-154123077 (-)
C3H/HeJ ENSMUSG00175051321
 lncRNA gene Chr2:154871538-154873286 (-)
C57BL/6NJ ENSMUSG00215036828
 lncRNA gene Chr2:154286873-154288622 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005046488
 lncRNA gene Chr2:153269982-153271731 (-)
CBA/J ENSMUSG00210017068
 lncRNA gene Chr2:154802635-154804383 (-)
DBA/2J ENSMUSG00185049347
 lncRNA gene Chr2:154521001-154522750 (-)
FVB/NJ ENSMUSG00205046478
 lncRNA gene Chr2:153553708-153555457 (-)
JF1/MsJ ENSUMUG00000034580
 lncRNA gene Chr2:154171064-154172814 (-)
LP/J ENSMUSG00230046810
 lncRNA gene Chr2:156097927-156099676 (-)
NOD/ShiLtJ ENSMUSG00190047901
 lncRNA gene Chr2:154196649-154198398 (-)
NZO/HlLtJ ENSMUSG00225054209
 lncRNA gene Chr2:164118503-164120252 (-)
PWK/PhJ ENSLUMG00010047340
 lncRNA gene Chr2:154107895-154109644 (-)
SPRET/EiJ ENSMSPG00010035887
 lncRNA gene Chr2:156882227-156883958 (-)
WSB/EiJ ENSIUOG00005047094
 lncRNA gene Chr2:153882139-153883888 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    600
  • Tissues
    1
  • cDNA Data
    1
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 78316 NCBI Gene Model | MGI Sequence Detail 1742 C57BL/6J ±  kb
transcript NR_166472 RefSeq | MGI Sequence Detail 633 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 1
    Primer pair 1
References
more
  • Summaries
    All 10
    Developmental Gene Expression 1
    Gene Ontology 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:254597 Bhargava S, et al., The epigenetic modifier Fam208a is required to maintain epiblast cell fitness. Sci Rep. 2017 Aug 24;7(1):9322
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory